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GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data

BACKGROUND: Due the computational complexity of sequence alignment algorithms, various accelerated solutions have been proposed to speedup this analysis. NVBIO is the only available GPU library that accelerates sequence alignment of high-throughput NGS data, but has limited performance. In this arti...

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Detalles Bibliográficos
Publicado en:BMC Bioinformatics
Main Authors: Ahmed, Nauman, Lévy, Jonathan, Ren, Shanshan, Mushtaq, Hamid, Bertels, Koen, Al-Ars, Zaid
Formato: Artigo
Idioma:Inglês
Publicado: BioMed Central 2019
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC6815017/
https://ncbi.nlm.nih.gov/pubmed/31653208
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-3086-9
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