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GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data

BACKGROUND: Due the computational complexity of sequence alignment algorithms, various accelerated solutions have been proposed to speedup this analysis. NVBIO is the only available GPU library that accelerates sequence alignment of high-throughput NGS data, but has limited performance. In this arti...

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Détails bibliographiques
Publié dans:BMC Bioinformatics
Auteurs principaux: Ahmed, Nauman, Lévy, Jonathan, Ren, Shanshan, Mushtaq, Hamid, Bertels, Koen, Al-Ars, Zaid
Format: Artigo
Langue:Inglês
Publié: BioMed Central 2019
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC6815017/
https://ncbi.nlm.nih.gov/pubmed/31653208
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-3086-9
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