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Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on Graphics Processing Units

GATK HaplotypeCaller (HC) is a popular variant caller, which is widely used to identify variants in complex genomes. However, due to its high variants detection accuracy, it suffers from long execution time. In GATK HC, the pair-HMMs forward algorithm accounts for a large percentage of the total exe...

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Detaylı Bibliyografya
Asıl Yazarlar: Shanshan Ren, Koen Bertels, Zaid Al-Ars
Materyal Türü: Artigo
Dil:Inglês
Baskı/Yayın Bilgisi: SAGE Publishing 2018-03-01
Seri Bilgileri:Evolutionary Bioinformatics
Online Erişim:https://doi.org/10.1177/1176934318760543
Etiketler: Etiketle
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