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GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data

BACKGROUND: Due the computational complexity of sequence alignment algorithms, various accelerated solutions have been proposed to speedup this analysis. NVBIO is the only available GPU library that accelerates sequence alignment of high-throughput NGS data, but has limited performance. In this arti...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Ahmed, Nauman, Lévy, Jonathan, Ren, Shanshan, Mushtaq, Hamid, Bertels, Koen, Al-Ars, Zaid
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6815017/
https://ncbi.nlm.nih.gov/pubmed/31653208
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-3086-9
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