RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairin...

Descripció completa

Guardat en:
Dades bibliogràfiques
Autors principals: Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, Ye, Chen, Zhang, Yong, Hu, Jianfei, Zhang, Kunlin, Xu, Xin, Cong, Lijuan, Lu, Hong, Ren, Xide, Ren, Xiaoyu, He, Jun, Tao, Lin, Passey, Douglas A., Wang, Jian, Yang, Huanming, Yu, Jun, Li, Songgang
Format: Artigo
Idioma:Inglês
Publicat: Cold Spring Harbor Laboratory Press 2002
Matèries:
Methods
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC186573/
https://ncbi.nlm.nih.gov/pubmed/11997349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.165102
Etiquetes: Afegir etiqueta
Sense etiquetes, Sigues el primer a etiquetar aquest registre!

Ítems similars