RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairin...

Description complète

Enregistré dans:
Détails bibliographiques
Auteurs principaux: Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, Ye, Chen, Zhang, Yong, Hu, Jianfei, Zhang, Kunlin, Xu, Xin, Cong, Lijuan, Lu, Hong, Ren, Xide, Ren, Xiaoyu, He, Jun, Tao, Lin, Passey, Douglas A., Wang, Jian, Yang, Huanming, Yu, Jun, Li, Songgang
Format: Artigo
Langue:Inglês
Publié: Cold Spring Harbor Laboratory Press 2002
Sujets:
Methods
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC186573/
https://ncbi.nlm.nih.gov/pubmed/11997349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.165102
Tags: Ajouter un tag
Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires