RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairin...

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Bibliografiset tiedot
Päätekijät: Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, Ye, Chen, Zhang, Yong, Hu, Jianfei, Zhang, Kunlin, Xu, Xin, Cong, Lijuan, Lu, Hong, Ren, Xide, Ren, Xiaoyu, He, Jun, Tao, Lin, Passey, Douglas A., Wang, Jian, Yang, Huanming, Yu, Jun, Li, Songgang
Aineistotyyppi: Artigo
Kieli:Inglês
Julkaistu: Cold Spring Harbor Laboratory Press 2002
Aiheet:
Methods
Linkit:https://ncbi.nlm.nih.gov/pmc/articles/PMC186573/
https://ncbi.nlm.nih.gov/pubmed/11997349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.165102
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