RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairin...

ver descrição completa

Na minha lista:
Detalhes bibliográficos
Main Authors: Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, Ye, Chen, Zhang, Yong, Hu, Jianfei, Zhang, Kunlin, Xu, Xin, Cong, Lijuan, Lu, Hong, Ren, Xide, Ren, Xiaoyu, He, Jun, Tao, Lin, Passey, Douglas A., Wang, Jian, Yang, Huanming, Yu, Jun, Li, Songgang
Formato: Artigo
Idioma:Inglês
Publicado em: Cold Spring Harbor Laboratory Press 2002
Assuntos:
Methods
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC186573/
https://ncbi.nlm.nih.gov/pubmed/11997349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.165102
Tags: Adicionar Tag
Sem tags, seja o primeiro a adicionar uma tag!

Registos relacionados