RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software Phrap is used to compute meaningful error probabilities for each base. Clone-end-pairin...

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Dettagli Bibliografici
Autori principali: Wang, Jun, Wong, Gane Ka-Shu, Ni, Peixiang, Han, Yujun, Huang, Xiangang, Zhang, Jianguo, Ye, Chen, Zhang, Yong, Hu, Jianfei, Zhang, Kunlin, Xu, Xin, Cong, Lijuan, Lu, Hong, Ren, Xide, Ren, Xiaoyu, He, Jun, Tao, Lin, Passey, Douglas A., Wang, Jian, Yang, Huanming, Yu, Jun, Li, Songgang
Natura: Artigo
Lingua:Inglês
Pubblicazione: Cold Spring Harbor Laboratory Press 2002
Soggetti:
Methods
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC186573/
https://ncbi.nlm.nih.gov/pubmed/11997349
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.165102
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