The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics

od Wiredja, Danica D, Koyutürk, Mehmet, Chance, Mark R
Wydane w Bioinformatics (2017)

CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis

od Ayati, Marzieh, Wiredja, Danica, Schlatzer, Daniela, Maxwell, Sean, Li, Ming, Koyutürk, Mehmet, Chance, Mark R.
Wydane w PLoS Comput Biol (2019)

Global phosphoproteomics of CCR5-tropic HIV-1 signaling reveals reprogramming of cellular protein production pathways and identifies p70-S6K1 and MK2 as HIV-responsive kinases requ...

od Wiredja, Danica D., Tabler, Caroline O., Schlatzer, Daniela M., Li, Ming, Chance, Mark R., Tilton, John C.
Wydane w Retrovirology (2018)

Phosphoproteomics Profiling of Non-Small Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator

od Wiredja, Danica D., Ayati, Marzieh, Mazhar, Sahar, Sangodkar, Jaya, Maxwell, Sean, Schlatzer, Daniela, Narla, Goutham, Koyutürk, Mehmet, Chance, Mark R.
Wydane w Proteomics (2017)

Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results

od Wang, Hannah, Wiredja, Danica, Yang, Lu, Bulterys, Philip L, Costales, Cristina, Röltgen, Katharina, Manalac, Justin, Yee, Jennifer, Zehnder, James, Shi, Run Zhang, Boyd, Scott D, Pinsky, Benjamin A
Wydane w Clin Chem (2021)

Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors

od O’Connor, Caitlin M., Leonard, Daniel, Wiredja, Danica, Avelar, Rita A., Wang, Zhizhi, Schlatzer, Daniela, Bryson, Benjamin, Tokala, Eesha, Taylor, Sarah E., Upadhyay, Aditya, Sangodkar, Jaya, Gingras, Anne-Claude, Westermarck, Jukka, Xu, Wenqing, DiFeo, Analisa, Brautigan, David L., Haider, Shozeb, Jackson, Mark, Narla, Goutham
Wydane w Oncogene (2019)

Selective PP2A enhancement through biased heterotrimer stabilization

od Leonard, Daniel, Huang, Wei, Izadmehr, Sudeh, O’Connor, Caitlin M., Wiredja, Danica D., Wang, Zhizhi, Zaware, Nilesh, Chen, Yinghua, Schlatzer, Daniela M., Kiselar, Janna, Vasireddi, Nikhil, Schüchner, Stefan, Perl, Abbey L., Galsky, Matthew D., Xu, Wenqing, Brautigan, David L., Ogris, Egon, Taylor, Derek J., Narla, Goutham
Wydane w Cell (2020)

Small Molecule Activators of Protein Phosphatase 2A for the Treatment of Castration-Resistant Prostate Cancer

od McClinch, Kimberly, Avelar, Rita A., Callejas, David, Izadmehr, Sudeh, Wiredja, Danica, Perl, Abbey, Sangodkar, Jaya, Kastrinsky, David, Schlatzer, Daniela, Cooper, Maxwell, Kiselar, Janna, Stachnik, Agnes, Yao, Shen, Hoon, Divya, McQuaid, Dan, Zaware, Nilesh, Gong, Yixuan, Brautigan, David, Plymate, Stephen, Sprenger, Cynthia, Oh, William K., Levine, Alice C., Kirschenbaum, Alexander, Sfakianos, John, Sears, Rosalie, DiFeo, Analisa, Ioannou, Yiannis, Ohlmeyer, Michael, Narla, Goutham, Galsky, Matthew D.
Wydane w Cancer Res (2018)

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

od Sangodkar, Jaya, Perl, Abbey, Tohme, Rita, Kiselar, Janna, Kastrinsky, David B., Zaware, Nilesh, Izadmehr, Sudeh, Mazhar, Sahar, Wiredja, Danica D., O’Connor, Caitlin M., Hoon, Divya, Dhawan, Neil S., Schlatzer, Daniela, Yao, Shen, Leonard, Daniel, Borczuk, Alain C., Gokulrangan, Giridharan, Wang, Lifu, Svenson, Elena, Farrington, Caroline C., Yuan, Eric, Avelar, Rita A., Stachnik, Agnes, Smith, Blake, Gidwani, Vickram, Giannini, Heather M., McQuaid, Daniel, McClinch, Kimberly, Wang, Zhizhi, Levine, Alice C., Sears, Rosalie C., Chen, Edward Y., Duan, Qiaonan, Datt, Manish, Haider, Shozeb, Ma’ayan, Avi, DiFeo, Analisa, Sharma, Neelesh, Galsky, Matthew D., Brautigan, David L., Ioannou, Yiannis A., Xu, Wenqing, Chance, Mark R., Ohlmeyer, Michael, Narla, Goutham
Wydane w J Clin Invest (2017)

Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates

od Olson, John M., Evans, Cory J., Ngo, Kathy T., Kim, Hee Jong, Nguyen, Joseph Duy, Gurley, Kayla G. H., Ta, Truc, Patel, Vijay, Han, Lisa, Truong-N, Khoa T., Liang, Letty, Chu, Maggie K., Lam, Hiu, Ahn, Hannah G., Banerjee, Abhik Kumar, Choi, In Young, Kelley, Ross G., Moridzadeh, Naseem, Khan, Awais M., Khan, Omair, Lee, Szuyao, Johnson, Elizabeth B., Tigranyan, Annie, Wang, Jay, Gandhi, Anand D., Padhiar, Manish M., Calvopina, Joseph Hargan, Sumra, Kirandeep, Ou, Kristy, Wu, Jessie C., Dickan, Joseph N., Ahmadi, Sabrena M., Allen, Donald N., Mai, Van Thanh, Ansari, Saif, Yeh, George, Yoon, Earl, Gon, Kimberly, Yu, John Y., He, Johnny, Zaretsky, Jesse M., Lee, Noemi E., Kuoy, Edward, Patananan, Alexander N., Sitz, Daniel, Tran, PhuongThao, Do, Minh-Tu, Akhave, Samira J., Alvarez, Silverio D., Asem, Bobby, Asem, Neda, Azarian, Nicole A., Babaesfahani, Arezou, Bahrami, Ahmad, Bhamra, Manjeet, Bhargava, Ragini, Bhatia, Rakesh, Bhatia, Subir, Bumacod, Nicholas, Caine, Jonathan J., Caldwell, Thomas A., Calica, Nicole A., Calonico, Elise M., Chan, Carman, Chan, Helen H.-L., Chang, Albert, Chang, Chiaen, Chang, Daniel, Chang, Jennifer S., Charania, Nauman, Chen, Jasmine Y., Chen, Kevin, Chen, Lu, Chen, Yuyu, Cheung, Derek J., Cheung, Jesse J., Chew, Jessica J., Chew, Nicole B., Chien, Cheng-An Tony, Chin, Alana M., Chin, Chee Jia, Cho, Youngho, Chou, Man Ting, Chow, Ke-Huan K., Chu, Carolyn, Chu, Derrick M., Chu, Virginia, Chuang, Katherine, Chugh, Arunit Singh, Cubberly, Mark R., Daniel, Michael Guillermo, Datta, Sangita, Dhaliwal, Raj, Dinh, Jenny, Dixit, Dhaval, Dowling, Emmylou, Feng, Melinda, From, Christopher M., Furukawa, Daisuke, Gaddipati, Himaja, Gevorgyan, Lilit, Ghaznavi, Zunera, Ghosh, Tulika, Gill, Jaskaran, Groves, David J., Gurara, Kalkidan K., Haghighi, Ali R., Havard, Alexandra L., Heyrani, Nasser, Hioe, Tanya, Hong, Kirim, Houman, Justin J., Howland, Molly, Hsia, Elaine L., Hsueh, Justin, Hu, Stacy, Huang, Andrew J., Huynh, Jasmine C., Huynh, Jenny, Iwuchukwu, Chris, Jang, Michael J., Jiang, An An, Kahlon, Simran, Kao, Pei-Yun, Kaur, Manpreet, Keehn, Matthew G., Kim, Elizabeth J., Kim, Hannah, Kim, Michelle J., Kim, Shawn J., Kitich, Aleksandar, Kornberg, Ross A., Kouzelos, Nicholas G., Kuon, Jane, Lau, Bryan, Lau, Roger K., Law, Rona, Le, Huy D., Le, Rachael, Lee, Carrou, Lee, Christina, Lee, Grace E., Lee, Kenny, Lee, Michelle J., Lee, Regina V., Lee, Sean H. K., Lee, Sung Kyu, Lee, Sung-Ling D., Lee, Yong Jun, Leong, Megan J., Li, David M., Li, Hao, Liang, Xingfu, Lin, Eric, Lin, Michelle M., Lin, Peter, Lin, Tiffany, Lu, Stacey, Luong, Serena S., Ma, Jessica S., Ma, Li, Maghen, Justin N., Mallam, Sravya, Mann, Shivtaj, Melehani, Jason H., Miller, Ryan C., Mittal, Nitish, Moazez, Carmel M., Moon, Susie, Moridzadeh, Rameen, Ngo, Kaley, Nguyen, Hanh H., Nguyen, Kambria, Nguyen, Thien H., Nieh, Angela W., Niu, Isabella, Oh, Seo-Kyung, Ong, Jessica R., Oyama, Randi K., Park, Joseph, Park, Yaelim A., Passmore, Kimberly A., Patel, Ami, Patel, Amy A., Patel, Dhruv, Patel, Tirth, Peterson, Katherine E., Pham, An Huynh, Pham, Steven V., Phuphanich, Melissa E., Poria, Neil D., Pourzia, Alexandra, Ragland, Victoria, Ranat, Riki D., Rice, Cameron M., Roh, David, Rojhani, Solomon, Sadri, Lili, Saguros, Agafe, Saifee, Zainab, Sandhu, Manjot, Scruggs, Brooke, Scully, Lisa M., Shih, Vanessa, Shin, Brian A., Sholklapper, Tamir, Singh, Harnek, Singh, Sumedha, Snyder, Sondra L., Sobotka, Katelyn F., Song, Sae Ho, Sukumar, Siddharth, Sullivan, Halley C., Sy, Mark, Tan, Hande, Taylor, Sara K., Thaker, Shivani K., Thakore, Tulsi, Tong, Gregory E., Tran, Jacinda N., Tran, Jonathan, Tran, Tuan D., Tran, Vivi, Trang, Cindy L., Trinh, Hung G., Trinh, Peter, Tseng, Han-Ching H., Uotani, Ted T., Uraizee, Akram V., Vu, Kent K. T., Vu, Kevin K. T., Wadhwani, Komal, Walia, Paluk K., Wang, Rebecca S., Wang, Shuo, Wang, Stephanie J., Wiredja, Danica D., Wong, Andrew L., Wu, Daniel, Xue, Xi, Yanez, Griselda, Yang, Yung-Hsuan, Ye, Zhong, Yee, Victor W., Yeh, Cynthia, Zhao, Yue, Zheng, Xin, Ziegenbalg, Anke, Alkali, Jon, Azizkhanian, Ida, Bhakta, Akash, Berry, Luke, Castillo, Ryen, Darwish, Sonja, Dickinson, Holly, Dutta, Ritika, Ghosh, Rahul Kumar, Guerin, Riley, Hofman, Jonathan, Iwamoto, Garrick, Kang, Sarah, Kim, Andrew, Kim, Brian, Kim, Hanwool, Kim, Kristine, Kim, Suji, Ko, Julie, Koenig, Michael, LaRiviere, Alejandro, Lee, Clifton, Lee, Jiwon, Lung, Brandon, Mittelman, Max, Murata, Mark, Park, Yujin, Rothberg, Daniel, Sprung-Keyser, Ben, Thaker, Kunal, Yip, Vivian, Picard, Paul, Diep, Francie, Villarasa, Nikki, Hartenstein, Volker, Shapiro, Casey, Levis-Fitzgerald, Marc, Jaworski, Leslie, Loppato, David, Clark, Ira E., Banerjee, Utpal
Wydane w G3 (Bethesda) (2019)