The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics

por Wiredja, Danica D, Koyutürk, Mehmet, Chance, Mark R
Publicado en Bioinformatics (2017)

CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis

por Ayati, Marzieh, Wiredja, Danica, Schlatzer, Daniela, Maxwell, Sean, Li, Ming, Koyutürk, Mehmet, Chance, Mark R.
Publicado en PLoS Comput Biol (2019)

Global phosphoproteomics of CCR5-tropic HIV-1 signaling reveals reprogramming of cellular protein production pathways and identifies p70-S6K1 and MK2 as HIV-responsive kinases requ...

por Wiredja, Danica D., Tabler, Caroline O., Schlatzer, Daniela M., Li, Ming, Chance, Mark R., Tilton, John C.
Publicado en Retrovirology (2018)

Phosphoproteomics Profiling of Non-Small Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator

por Wiredja, Danica D., Ayati, Marzieh, Mazhar, Sahar, Sangodkar, Jaya, Maxwell, Sean, Schlatzer, Daniela, Narla, Goutham, Koyutürk, Mehmet, Chance, Mark R.
Publicado en Proteomics (2017)

Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results

por Wang, Hannah, Wiredja, Danica, Yang, Lu, Bulterys, Philip L, Costales, Cristina, Röltgen, Katharina, Manalac, Justin, Yee, Jennifer, Zehnder, James, Shi, Run Zhang, Boyd, Scott D, Pinsky, Benjamin A
Publicado en Clin Chem (2021)

Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors

por O’Connor, Caitlin M., Leonard, Daniel, Wiredja, Danica, Avelar, Rita A., Wang, Zhizhi, Schlatzer, Daniela, Bryson, Benjamin, Tokala, Eesha, Taylor, Sarah E., Upadhyay, Aditya, Sangodkar, Jaya, Gingras, Anne-Claude, Westermarck, Jukka, Xu, Wenqing, DiFeo, Analisa, Brautigan, David L., Haider, Shozeb, Jackson, Mark, Narla, Goutham
Publicado en Oncogene (2019)

Selective PP2A enhancement through biased heterotrimer stabilization

por Leonard, Daniel, Huang, Wei, Izadmehr, Sudeh, O’Connor, Caitlin M., Wiredja, Danica D., Wang, Zhizhi, Zaware, Nilesh, Chen, Yinghua, Schlatzer, Daniela M., Kiselar, Janna, Vasireddi, Nikhil, Schüchner, Stefan, Perl, Abbey L., Galsky, Matthew D., Xu, Wenqing, Brautigan, David L., Ogris, Egon, Taylor, Derek J., Narla, Goutham
Publicado en Cell (2020)

Small Molecule Activators of Protein Phosphatase 2A for the Treatment of Castration-Resistant Prostate Cancer

por McClinch, Kimberly, Avelar, Rita A., Callejas, David, Izadmehr, Sudeh, Wiredja, Danica, Perl, Abbey, Sangodkar, Jaya, Kastrinsky, David, Schlatzer, Daniela, Cooper, Maxwell, Kiselar, Janna, Stachnik, Agnes, Yao, Shen, Hoon, Divya, McQuaid, Dan, Zaware, Nilesh, Gong, Yixuan, Brautigan, David, Plymate, Stephen, Sprenger, Cynthia, Oh, William K., Levine, Alice C., Kirschenbaum, Alexander, Sfakianos, John, Sears, Rosalie, DiFeo, Analisa, Ioannou, Yiannis, Ohlmeyer, Michael, Narla, Goutham, Galsky, Matthew D.
Publicado en Cancer Res (2018)

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

por Sangodkar, Jaya, Perl, Abbey, Tohme, Rita, Kiselar, Janna, Kastrinsky, David B., Zaware, Nilesh, Izadmehr, Sudeh, Mazhar, Sahar, Wiredja, Danica D., O’Connor, Caitlin M., Hoon, Divya, Dhawan, Neil S., Schlatzer, Daniela, Yao, Shen, Leonard, Daniel, Borczuk, Alain C., Gokulrangan, Giridharan, Wang, Lifu, Svenson, Elena, Farrington, Caroline C., Yuan, Eric, Avelar, Rita A., Stachnik, Agnes, Smith, Blake, Gidwani, Vickram, Giannini, Heather M., McQuaid, Daniel, McClinch, Kimberly, Wang, Zhizhi, Levine, Alice C., Sears, Rosalie C., Chen, Edward Y., Duan, Qiaonan, Datt, Manish, Haider, Shozeb, Ma’ayan, Avi, DiFeo, Analisa, Sharma, Neelesh, Galsky, Matthew D., Brautigan, David L., Ioannou, Yiannis A., Xu, Wenqing, Chance, Mark R., Ohlmeyer, Michael, Narla, Goutham
Publicado en J Clin Invest (2017)

Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates

por Olson, John M., Evans, Cory J., Ngo, Kathy T., Kim, Hee Jong, Nguyen, Joseph Duy, Gurley, Kayla G. H., Ta, Truc, Patel, Vijay, Han, Lisa, Truong-N, Khoa T., Liang, Letty, Chu, Maggie K., Lam, Hiu, Ahn, Hannah G., Banerjee, Abhik Kumar, Choi, In Young, Kelley, Ross G., Moridzadeh, Naseem, Khan, Awais M., Khan, Omair, Lee, Szuyao, Johnson, Elizabeth B., Tigranyan, Annie, Wang, Jay, Gandhi, Anand D., Padhiar, Manish M., Calvopina, Joseph Hargan, Sumra, Kirandeep, Ou, Kristy, Wu, Jessie C., Dickan, Joseph N., Ahmadi, Sabrena M., Allen, Donald N., Mai, Van Thanh, Ansari, Saif, Yeh, George, Yoon, Earl, Gon, Kimberly, Yu, John Y., He, Johnny, Zaretsky, Jesse M., Lee, Noemi E., Kuoy, Edward, Patananan, Alexander N., Sitz, Daniel, Tran, PhuongThao, Do, Minh-Tu, Akhave, Samira J., Alvarez, Silverio D., Asem, Bobby, Asem, Neda, Azarian, Nicole A., Babaesfahani, Arezou, Bahrami, Ahmad, Bhamra, Manjeet, Bhargava, Ragini, Bhatia, Rakesh, Bhatia, Subir, Bumacod, Nicholas, Caine, Jonathan J., Caldwell, Thomas A., Calica, Nicole A., Calonico, Elise M., Chan, Carman, Chan, Helen H.-L., Chang, Albert, Chang, Chiaen, Chang, Daniel, Chang, Jennifer S., Charania, Nauman, Chen, Jasmine Y., Chen, Kevin, Chen, Lu, Chen, Yuyu, Cheung, Derek J., Cheung, Jesse J., Chew, Jessica J., Chew, Nicole B., Chien, Cheng-An Tony, Chin, Alana M., Chin, Chee Jia, Cho, Youngho, Chou, Man Ting, Chow, Ke-Huan K., Chu, Carolyn, Chu, Derrick M., Chu, Virginia, Chuang, Katherine, Chugh, Arunit Singh, Cubberly, Mark R., Daniel, Michael Guillermo, Datta, Sangita, Dhaliwal, Raj, Dinh, Jenny, Dixit, Dhaval, Dowling, Emmylou, Feng, Melinda, From, Christopher M., Furukawa, Daisuke, Gaddipati, Himaja, Gevorgyan, Lilit, Ghaznavi, Zunera, Ghosh, Tulika, Gill, Jaskaran, Groves, David J., Gurara, Kalkidan K., Haghighi, Ali R., Havard, Alexandra L., Heyrani, Nasser, Hioe, Tanya, Hong, Kirim, Houman, Justin J., Howland, Molly, Hsia, Elaine L., Hsueh, Justin, Hu, Stacy, Huang, Andrew J., Huynh, Jasmine C., Huynh, Jenny, Iwuchukwu, Chris, Jang, Michael J., Jiang, An An, Kahlon, Simran, Kao, Pei-Yun, Kaur, Manpreet, Keehn, Matthew G., Kim, Elizabeth J., Kim, Hannah, Kim, Michelle J., Kim, Shawn J., Kitich, Aleksandar, Kornberg, Ross A., Kouzelos, Nicholas G., Kuon, Jane, Lau, Bryan, Lau, Roger K., Law, Rona, Le, Huy D., Le, Rachael, Lee, Carrou, Lee, Christina, Lee, Grace E., Lee, Kenny, Lee, Michelle J., Lee, Regina V., Lee, Sean H. K., Lee, Sung Kyu, Lee, Sung-Ling D., Lee, Yong Jun, Leong, Megan J., Li, David M., Li, Hao, Liang, Xingfu, Lin, Eric, Lin, Michelle M., Lin, Peter, Lin, Tiffany, Lu, Stacey, Luong, Serena S., Ma, Jessica S., Ma, Li, Maghen, Justin N., Mallam, Sravya, Mann, Shivtaj, Melehani, Jason H., Miller, Ryan C., Mittal, Nitish, Moazez, Carmel M., Moon, Susie, Moridzadeh, Rameen, Ngo, Kaley, Nguyen, Hanh H., Nguyen, Kambria, Nguyen, Thien H., Nieh, Angela W., Niu, Isabella, Oh, Seo-Kyung, Ong, Jessica R., Oyama, Randi K., Park, Joseph, Park, Yaelim A., Passmore, Kimberly A., Patel, Ami, Patel, Amy A., Patel, Dhruv, Patel, Tirth, Peterson, Katherine E., Pham, An Huynh, Pham, Steven V., Phuphanich, Melissa E., Poria, Neil D., Pourzia, Alexandra, Ragland, Victoria, Ranat, Riki D., Rice, Cameron M., Roh, David, Rojhani, Solomon, Sadri, Lili, Saguros, Agafe, Saifee, Zainab, Sandhu, Manjot, Scruggs, Brooke, Scully, Lisa M., Shih, Vanessa, Shin, Brian A., Sholklapper, Tamir, Singh, Harnek, Singh, Sumedha, Snyder, Sondra L., Sobotka, Katelyn F., Song, Sae Ho, Sukumar, Siddharth, Sullivan, Halley C., Sy, Mark, Tan, Hande, Taylor, Sara K., Thaker, Shivani K., Thakore, Tulsi, Tong, Gregory E., Tran, Jacinda N., Tran, Jonathan, Tran, Tuan D., Tran, Vivi, Trang, Cindy L., Trinh, Hung G., Trinh, Peter, Tseng, Han-Ching H., Uotani, Ted T., Uraizee, Akram V., Vu, Kent K. T., Vu, Kevin K. T., Wadhwani, Komal, Walia, Paluk K., Wang, Rebecca S., Wang, Shuo, Wang, Stephanie J., Wiredja, Danica D., Wong, Andrew L., Wu, Daniel, Xue, Xi, Yanez, Griselda, Yang, Yung-Hsuan, Ye, Zhong, Yee, Victor W., Yeh, Cynthia, Zhao, Yue, Zheng, Xin, Ziegenbalg, Anke, Alkali, Jon, Azizkhanian, Ida, Bhakta, Akash, Berry, Luke, Castillo, Ryen, Darwish, Sonja, Dickinson, Holly, Dutta, Ritika, Ghosh, Rahul Kumar, Guerin, Riley, Hofman, Jonathan, Iwamoto, Garrick, Kang, Sarah, Kim, Andrew, Kim, Brian, Kim, Hanwool, Kim, Kristine, Kim, Suji, Ko, Julie, Koenig, Michael, LaRiviere, Alejandro, Lee, Clifton, Lee, Jiwon, Lung, Brandon, Mittelman, Max, Murata, Mark, Park, Yujin, Rothberg, Daniel, Sprung-Keyser, Ben, Thaker, Kunal, Yip, Vivian, Picard, Paul, Diep, Francie, Villarasa, Nikki, Hartenstein, Volker, Shapiro, Casey, Levis-Fitzgerald, Marc, Jaworski, Leslie, Loppato, David, Clark, Ira E., Banerjee, Utpal
Publicado en G3 (Bethesda) (2019)