The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics

von Wiredja, Danica D, Koyutürk, Mehmet, Chance, Mark R
Veröffentlicht in Bioinformatics (2017)

CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis

von Ayati, Marzieh, Wiredja, Danica, Schlatzer, Daniela, Maxwell, Sean, Li, Ming, Koyutürk, Mehmet, Chance, Mark R.
Veröffentlicht in PLoS Comput Biol (2019)

Global phosphoproteomics of CCR5-tropic HIV-1 signaling reveals reprogramming of cellular protein production pathways and identifies p70-S6K1 and MK2 as HIV-responsive kinases requ...

von Wiredja, Danica D., Tabler, Caroline O., Schlatzer, Daniela M., Li, Ming, Chance, Mark R., Tilton, John C.
Veröffentlicht in Retrovirology (2018)

Phosphoproteomics Profiling of Non-Small Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator

von Wiredja, Danica D., Ayati, Marzieh, Mazhar, Sahar, Sangodkar, Jaya, Maxwell, Sean, Schlatzer, Daniela, Narla, Goutham, Koyutürk, Mehmet, Chance, Mark R.
Veröffentlicht in Proteomics (2017)

Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results

von Wang, Hannah, Wiredja, Danica, Yang, Lu, Bulterys, Philip L, Costales, Cristina, Röltgen, Katharina, Manalac, Justin, Yee, Jennifer, Zehnder, James, Shi, Run Zhang, Boyd, Scott D, Pinsky, Benjamin A
Veröffentlicht in Clin Chem (2021)

Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors

von O’Connor, Caitlin M., Leonard, Daniel, Wiredja, Danica, Avelar, Rita A., Wang, Zhizhi, Schlatzer, Daniela, Bryson, Benjamin, Tokala, Eesha, Taylor, Sarah E., Upadhyay, Aditya, Sangodkar, Jaya, Gingras, Anne-Claude, Westermarck, Jukka, Xu, Wenqing, DiFeo, Analisa, Brautigan, David L., Haider, Shozeb, Jackson, Mark, Narla, Goutham
Veröffentlicht in Oncogene (2019)

Selective PP2A enhancement through biased heterotrimer stabilization

von Leonard, Daniel, Huang, Wei, Izadmehr, Sudeh, O’Connor, Caitlin M., Wiredja, Danica D., Wang, Zhizhi, Zaware, Nilesh, Chen, Yinghua, Schlatzer, Daniela M., Kiselar, Janna, Vasireddi, Nikhil, Schüchner, Stefan, Perl, Abbey L., Galsky, Matthew D., Xu, Wenqing, Brautigan, David L., Ogris, Egon, Taylor, Derek J., Narla, Goutham
Veröffentlicht in Cell (2020)

Small Molecule Activators of Protein Phosphatase 2A for the Treatment of Castration-Resistant Prostate Cancer

von McClinch, Kimberly, Avelar, Rita A., Callejas, David, Izadmehr, Sudeh, Wiredja, Danica, Perl, Abbey, Sangodkar, Jaya, Kastrinsky, David, Schlatzer, Daniela, Cooper, Maxwell, Kiselar, Janna, Stachnik, Agnes, Yao, Shen, Hoon, Divya, McQuaid, Dan, Zaware, Nilesh, Gong, Yixuan, Brautigan, David, Plymate, Stephen, Sprenger, Cynthia, Oh, William K., Levine, Alice C., Kirschenbaum, Alexander, Sfakianos, John, Sears, Rosalie, DiFeo, Analisa, Ioannou, Yiannis, Ohlmeyer, Michael, Narla, Goutham, Galsky, Matthew D.
Veröffentlicht in Cancer Res (2018)

Activation of tumor suppressor protein PP2A inhibits KRAS-driven tumor growth

von Sangodkar, Jaya, Perl, Abbey, Tohme, Rita, Kiselar, Janna, Kastrinsky, David B., Zaware, Nilesh, Izadmehr, Sudeh, Mazhar, Sahar, Wiredja, Danica D., O’Connor, Caitlin M., Hoon, Divya, Dhawan, Neil S., Schlatzer, Daniela, Yao, Shen, Leonard, Daniel, Borczuk, Alain C., Gokulrangan, Giridharan, Wang, Lifu, Svenson, Elena, Farrington, Caroline C., Yuan, Eric, Avelar, Rita A., Stachnik, Agnes, Smith, Blake, Gidwani, Vickram, Giannini, Heather M., McQuaid, Daniel, McClinch, Kimberly, Wang, Zhizhi, Levine, Alice C., Sears, Rosalie C., Chen, Edward Y., Duan, Qiaonan, Datt, Manish, Haider, Shozeb, Ma’ayan, Avi, DiFeo, Analisa, Sharma, Neelesh, Galsky, Matthew D., Brautigan, David L., Ioannou, Yiannis A., Xu, Wenqing, Chance, Mark R., Ohlmeyer, Michael, Narla, Goutham
Veröffentlicht in J Clin Invest (2017)

Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates

von Olson, John M., Evans, Cory J., Ngo, Kathy T., Kim, Hee Jong, Nguyen, Joseph Duy, Gurley, Kayla G. H., Ta, Truc, Patel, Vijay, Han, Lisa, Truong-N, Khoa T., Liang, Letty, Chu, Maggie K., Lam, Hiu, Ahn, Hannah G., Banerjee, Abhik Kumar, Choi, In Young, Kelley, Ross G., Moridzadeh, Naseem, Khan, Awais M., Khan, Omair, Lee, Szuyao, Johnson, Elizabeth B., Tigranyan, Annie, Wang, Jay, Gandhi, Anand D., Padhiar, Manish M., Calvopina, Joseph Hargan, Sumra, Kirandeep, Ou, Kristy, Wu, Jessie C., Dickan, Joseph N., Ahmadi, Sabrena M., Allen, Donald N., Mai, Van Thanh, Ansari, Saif, Yeh, George, Yoon, Earl, Gon, Kimberly, Yu, John Y., He, Johnny, Zaretsky, Jesse M., Lee, Noemi E., Kuoy, Edward, Patananan, Alexander N., Sitz, Daniel, Tran, PhuongThao, Do, Minh-Tu, Akhave, Samira J., Alvarez, Silverio D., Asem, Bobby, Asem, Neda, Azarian, Nicole A., Babaesfahani, Arezou, Bahrami, Ahmad, Bhamra, Manjeet, Bhargava, Ragini, Bhatia, Rakesh, Bhatia, Subir, Bumacod, Nicholas, Caine, Jonathan J., Caldwell, Thomas A., Calica, Nicole A., Calonico, Elise M., Chan, Carman, Chan, Helen H.-L., Chang, Albert, Chang, Chiaen, Chang, Daniel, Chang, Jennifer S., Charania, Nauman, Chen, Jasmine Y., Chen, Kevin, Chen, Lu, Chen, Yuyu, Cheung, Derek J., Cheung, Jesse J., Chew, Jessica J., Chew, Nicole B., Chien, Cheng-An Tony, Chin, Alana M., Chin, Chee Jia, Cho, Youngho, Chou, Man Ting, Chow, Ke-Huan K., Chu, Carolyn, Chu, Derrick M., Chu, Virginia, Chuang, Katherine, Chugh, Arunit Singh, Cubberly, Mark R., Daniel, Michael Guillermo, Datta, Sangita, Dhaliwal, Raj, Dinh, Jenny, Dixit, Dhaval, Dowling, Emmylou, Feng, Melinda, From, Christopher M., Furukawa, Daisuke, Gaddipati, Himaja, Gevorgyan, Lilit, Ghaznavi, Zunera, Ghosh, Tulika, Gill, Jaskaran, Groves, David J., Gurara, Kalkidan K., Haghighi, Ali R., Havard, Alexandra L., Heyrani, Nasser, Hioe, Tanya, Hong, Kirim, Houman, Justin J., Howland, Molly, Hsia, Elaine L., Hsueh, Justin, Hu, Stacy, Huang, Andrew J., Huynh, Jasmine C., Huynh, Jenny, Iwuchukwu, Chris, Jang, Michael J., Jiang, An An, Kahlon, Simran, Kao, Pei-Yun, Kaur, Manpreet, Keehn, Matthew G., Kim, Elizabeth J., Kim, Hannah, Kim, Michelle J., Kim, Shawn J., Kitich, Aleksandar, Kornberg, Ross A., Kouzelos, Nicholas G., Kuon, Jane, Lau, Bryan, Lau, Roger K., Law, Rona, Le, Huy D., Le, Rachael, Lee, Carrou, Lee, Christina, Lee, Grace E., Lee, Kenny, Lee, Michelle J., Lee, Regina V., Lee, Sean H. K., Lee, Sung Kyu, Lee, Sung-Ling D., Lee, Yong Jun, Leong, Megan J., Li, David M., Li, Hao, Liang, Xingfu, Lin, Eric, Lin, Michelle M., Lin, Peter, Lin, Tiffany, Lu, Stacey, Luong, Serena S., Ma, Jessica S., Ma, Li, Maghen, Justin N., Mallam, Sravya, Mann, Shivtaj, Melehani, Jason H., Miller, Ryan C., Mittal, Nitish, Moazez, Carmel M., Moon, Susie, Moridzadeh, Rameen, Ngo, Kaley, Nguyen, Hanh H., Nguyen, Kambria, Nguyen, Thien H., Nieh, Angela W., Niu, Isabella, Oh, Seo-Kyung, Ong, Jessica R., Oyama, Randi K., Park, Joseph, Park, Yaelim A., Passmore, Kimberly A., Patel, Ami, Patel, Amy A., Patel, Dhruv, Patel, Tirth, Peterson, Katherine E., Pham, An Huynh, Pham, Steven V., Phuphanich, Melissa E., Poria, Neil D., Pourzia, Alexandra, Ragland, Victoria, Ranat, Riki D., Rice, Cameron M., Roh, David, Rojhani, Solomon, Sadri, Lili, Saguros, Agafe, Saifee, Zainab, Sandhu, Manjot, Scruggs, Brooke, Scully, Lisa M., Shih, Vanessa, Shin, Brian A., Sholklapper, Tamir, Singh, Harnek, Singh, Sumedha, Snyder, Sondra L., Sobotka, Katelyn F., Song, Sae Ho, Sukumar, Siddharth, Sullivan, Halley C., Sy, Mark, Tan, Hande, Taylor, Sara K., Thaker, Shivani K., Thakore, Tulsi, Tong, Gregory E., Tran, Jacinda N., Tran, Jonathan, Tran, Tuan D., Tran, Vivi, Trang, Cindy L., Trinh, Hung G., Trinh, Peter, Tseng, Han-Ching H., Uotani, Ted T., Uraizee, Akram V., Vu, Kent K. T., Vu, Kevin K. T., Wadhwani, Komal, Walia, Paluk K., Wang, Rebecca S., Wang, Shuo, Wang, Stephanie J., Wiredja, Danica D., Wong, Andrew L., Wu, Daniel, Xue, Xi, Yanez, Griselda, Yang, Yung-Hsuan, Ye, Zhong, Yee, Victor W., Yeh, Cynthia, Zhao, Yue, Zheng, Xin, Ziegenbalg, Anke, Alkali, Jon, Azizkhanian, Ida, Bhakta, Akash, Berry, Luke, Castillo, Ryen, Darwish, Sonja, Dickinson, Holly, Dutta, Ritika, Ghosh, Rahul Kumar, Guerin, Riley, Hofman, Jonathan, Iwamoto, Garrick, Kang, Sarah, Kim, Andrew, Kim, Brian, Kim, Hanwool, Kim, Kristine, Kim, Suji, Ko, Julie, Koenig, Michael, LaRiviere, Alejandro, Lee, Clifton, Lee, Jiwon, Lung, Brandon, Mittelman, Max, Murata, Mark, Park, Yujin, Rothberg, Daniel, Sprung-Keyser, Ben, Thaker, Kunal, Yip, Vivian, Picard, Paul, Diep, Francie, Villarasa, Nikki, Hartenstein, Volker, Shapiro, Casey, Levis-Fitzgerald, Marc, Jaworski, Leslie, Loppato, David, Clark, Ira E., Banerjee, Utpal
Veröffentlicht in G3 (Bethesda) (2019)