WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis

Por Zerbino, Daniel R., Johnson, Nathan, Juettemann, Thomas, Wilder, Steven P., Flicek, Paul
Publicado em 2014

The Ensembl Regulatory Build

Por Zerbino, Daniel R, Wilder, Steven P, Johnson, Nathan, Juettemann, Thomas, Flicek, Paul R
Publicado no Genome Biol (2015)

Integration of the Rat Recombination and EST Maps in the Rat Genomic Sequence and Comparative Mapping Analysis With the Mouse Genome

Por Wilder, Steven P., Bihoreau, Marie-Thérèse, Argoud, Karène, Watanabe, Takeshi K., Lathrop, Mark, Gauguier, Dominique
Publicado em 2004

Chromosomal mapping of pancreatic islet morphological features and regulatory hormones in the spontaneously diabetic (Type 2) Goto-Kakizaki rat

Por Finlay, Clare, Argoud, Karène, Wilder, Steven P., Ouali, Fetta, Ktorza, Alain, Kaisaki, Pamela J., Gauguier, Dominique
Publicado em 2010

Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes

Por Wilder, Steven P, Kaisaki, Pamela J, Argoud, Karène, Salhan, Anita, Ragoussis, Jiannis, Bihoreau, Marie-Thérèse, Gauguier, Dominique
Publicado em 2009

Adaptive Expression of MicroRNA-125a in Adipose Tissue in Response to Obesity in Mice and Men

Por Diawara, Malika R., Hue, Christophe, Wilder, Steven P., Venteclef, Nicolas, Aron-Wisnewsky, Judith, Scott, James, Clément, Karine, Gauguier, Dominique, Calderari, Sophie
Publicado em 2014

Nutrigenomics of High Fat Diet Induced Obesity in Mice Suggests Relationships between Susceptibility to Fatty Liver Disease and the Proteasome

Por Waller-Evans, Helen, Hue, Christophe, Fearnside, Jane, Rothwell, Alice R., Lockstone, Helen E., Caldérari, Sophie, Wilder, Steven P., Cazier, Jean-Baptiste, Scott, James, Gauguier, Dominique
Publicado em 2013

Pathophysiological, Genetic and Gene Expression Features of a Novel Rodent Model of the Cardio-Metabolic Syndrome

Por Wallis, Robert H., Collins, Stephan C., Kaisaki, Pamela J., Argoud, Karène, Wilder, Steven P., Wallace, Karin J., Ria, Massimiliano, Ktorza, Alain, Rorsman, Patrik, Bihoreau, Marie-Thérèse, Gauguier, Dominique
Publicado em 2008

Phylometabonomic Patterns of Adaptation to High Fat Diet Feeding in Inbred Mice

Por Fearnside, Jane F., Dumas, Marc-Emmanuel, Rothwell, Alice R., Wilder, Steven P., Cloarec, Olivier, Toye, Ayo, Blancher, Christine, Holmes, Elaine, Tatoud, Roger, Barton, Richard H., Scott, James, Nicholson, Jeremy K., Gauguier, Dominique
Publicado em 2008

Integrative annotation of chromatin elements from ENCODE data

Por Hoffman, Michael M., Ernst, Jason, Wilder, Steven P., Kundaje, Anshul, Harris, Robert S., Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M., Bilmes, Jeffrey A., Birney, Ewan, Hardison, Ross C., Dunham, Ian, Kellis, Manolis, Noble, William Stafford
Publicado em 2013

Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression

Por Kaisaki, Pamela J., Otto, Georg W., Argoud, Karène, Collins, Stephan C., Wallis, Robert H., Wilder, Steven P., Yau, Anthony C. Y., Hue, Christophe, Calderari, Sophie, Bihoreau, Marie-Thérèse, Cazier, Jean-Baptiste, Mott, Richard, Gauguier, Dominique
Publicado no G3 (Bethesda) (2016)

Functional annotations of diabetes nephropathy susceptibility loci through analysis of genome-wide renal gene expression in rat models of diabetes mellitus

Por Hu, Yaomin, Kaisaki, Pamela J, Argoud, Karène, Wilder, Steven P, Wallace, Karin J, Woon, Peng Y, Blancher, Christine, Tarnow, Lise, Groop, Per-Henrik, Hadjadj, Samy, Marre, Michel, Parving, Hans-Henrik, Farrall, Martin, Cox, Roger D, Lathrop, Mark, Vionnet, Nathalie, Bihoreau, Marie-Thérèse, Gauguier, Dominique
Publicado em 2009

Ensembl regulation resources

Por Zerbino, Daniel R., Johnson, Nathan, Juetteman, Thomas, Sheppard, Dan, Wilder, Steven P., Lavidas, Ilias, Nuhn, Michael, Perry, Emily, Raffaillac-Desfosses, Quentin, Sobral, Daniel, Keefe, Damian, Gräf, Stefan, Ahmed, Ikhlak, Kinsella, Rhoda, Pritchard, Bethan, Brent, Simon, Amode, Ridwan, Parker, Anne, Trevanion, Steven, Birney, Ewan, Dunham, Ian, Flicek, Paul
Publicado no Database (Oxford) (2016)

Topological analysis of metabolic networks integrating co-segregating transcriptomes and metabolomes in type 2 diabetic rat congenic series

Por Dumas, Marc-Emmanuel, Domange, Céline, Calderari, Sophie, Martínez, Andrea Rodríguez, Ayala, Rafael, Wilder, Steven P., Suárez-Zamorano, Nicolas, Collins, Stephan C., Wallis, Robert H., Gu, Quan, Wang, Yulan, Hue, Christophe, Otto, Georg W., Argoud, Karène, Navratil, Vincent, Mitchell, Steve C., Lindon, John C., Holmes, Elaine, Cazier, Jean-Baptiste, Nicholson, Jeremy K., Gauguier, Dominique
Publicado no Genome Med (2016)

ENCODE Data in the UCSC Genome Browser: year 5 update

Por Rosenbloom, Kate R., Sloan, Cricket A., Malladi, Venkat S., Dreszer, Timothy R., Learned, Katrina, Kirkup, Vanessa M., Wong, Matthew C., Maddren, Morgan, Fang, Ruihua, Heitner, Steven G., Lee, Brian T., Barber, Galt P., Harte, Rachel A., Diekhans, Mark, Long, Jeffrey C., Wilder, Steven P., Zweig, Ann S., Karolchik, Donna, Kuhn, Robert M., Haussler, David, Kent, W. James
Publicado em 2013

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

Por Javierre, Biola M., Burren, Oliver S., Wilder, Steven P., Kreuzhuber, Roman, Hill, Steven M., Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W., Várnai, Csilla, Thiecke, Michiel J., Burden, Frances, Farrow, Samantha, Cutler, Antony J., Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, Stunnenberg, Hendrik G., Todd, John A., Zerbino, Daniel R., Stegle, Oliver, Ouwehand, Willem H., Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter
Publicado no Cell (2016)

Ensembl 2016

Por Yates, Andrew, Akanni, Wasiu, Amode, M. Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J., Cunningham, Fiona, Aken, Bronwen L., Zerbino, Daniel R., Flicek, Paul
Publicado no Nucleic Acids Res (2016)

Ensembl 2011

Por Flicek, Paul, Amode, M. Ridwan, Barrell, Daniel, Beal, Kathryn, Brent, Simon, Chen, Yuan, Clapham, Peter, Coates, Guy, Fairley, Susan, Fitzgerald, Stephen, Gordon, Leo, Hendrix, Maurice, Hourlier, Thibaut, Johnson, Nathan, Kähäri, Andreas, Keefe, Damian, Keenan, Stephen, Kinsella, Rhoda, Kokocinski, Felix, Kulesha, Eugene, Larsson, Pontus, Longden, Ian, McLaren, William, Overduin, Bert, Pritchard, Bethan, Riat, Harpreet Singh, Rios, Daniel, Ritchie, Graham R. S., Ruffier, Magali, Schuster, Michael, Sobral, Daniel, Spudich, Giulietta, Tang, Y. Amy, Trevanion, Stephen, Vandrovcova, Jana, Vilella, Albert J., White, Simon, Wilder, Steven P., Zadissa, Amonida, Zamora, Jorge, Aken, Bronwen L., Birney, Ewan, Cunningham, Fiona, Dunham, Ian, Durbin, Richard, Fernández-Suarez, Xosé M., Herrero, Javier, Hubbard, Tim J. P., Parker, Anne, Proctor, Glenn, Vogel, Jan, Searle, Stephen M. J.
Publicado em 2011

Ensembl 2015

Por Cunningham, Fiona, Amode, M. Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K., Keenan, Stephen, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Aken, Bronwen L., Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M.J., Spudich, Giulietta, Trevanion, Stephen J., Yates, Andy, Zerbino, Daniel R., Flicek, Paul
Publicado no Nucleic Acids Res (2014)

Ensembl 2017

Por Aken, Bronwen L., Achuthan, Premanand, Akanni, Wasiu, Amode, M. Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R., Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N., Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P., Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J., Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M., Trevanion, Stephen J., Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R., Flicek, Paul
Publicado no Nucleic Acids Res (2017)