Epigenomics in 3D: importance of long-range spreading and specific interactions in epigenomic maintenance

by Jost, Daniel, Vaillant, Cédric
Published in Nucleic Acids Res (2018)

Genomes of Multicellular Organisms Have Evolved to Attract Nucleosomes to Promoter Regions

by Tompitak, Marco, Vaillant, Cédric, Schiessel, Helmut
Published in Biophys J (2017)

IC-Finder: inferring robustly the hierarchical organization of chromatin folding

by Haddad, Noelle, Vaillant, Cédric, Jost, Daniel
Published in Nucleic Acids Res (2017)

Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains

by Jost, Daniel, Carrivain, Pascal, Cavalli, Giacomo, Vaillant, Cédric
Published 2014

DNA physical properties determine nucleosome occupancy from yeast to fly

by Miele, Vincent, Vaillant, Cédric, d'Aubenton-Carafa, Yves, Thermes, Claude, Grange, Thierry
Published 2008

Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences

by Audit, Benjamin, Vaillant, Cédric, Arnéodo, Alain, d'Aubenton-Carafa, Yves, Thermes, Claude
Published 2004

Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution

by Barbier, Jérémy, Vaillant, Cédric, Volff, Jean-Nicolas, Brunet, Frédéric G., Audit, Benjamin
Published in Genes (Basel) (2021)

Host cell surfaces induce a Type IV pili-dependent alteration of bacterial swimming

by Golovkine, Guillaume, Lemelle, Laurence, Burny, Claire, Vaillant, Cedric, Palierne, Jean-Francois, Place, Christophe, Huber, Philippe
Published in Sci Rep (2016)

Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells

by Audit, Benjamin, Zaghloul, Lamia, Vaillant, Cédric, Chevereau, Guillaume, d'Aubenton-Carafa, Yves, Thermes, Claude, Arneodo, Alain
Published 2009

A novel strategy of transcription regulation by intragenic nucleosome ordering

by Vaillant, Cédric, Palmeira, Leonor, Chevereau, Guillaume, Audit, Benjamin, d'Aubenton-Carafa, Yves, Thermes, Claude, Arneodo, Alain
Published 2010

Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans

by Sharma, Rahul, Jost, Daniel, Kind, Jop, Gómez-Saldivar, Georgina, van Steensel, Bas, Askjaer, Peter, Vaillant, Cédric, Meister, Peter
Published in Genes Dev (2014)

Nucleosome positioning by genomic excluding-energy barriers

by Milani, Pascale, Chevereau, Guillaume, Vaillant, Cédric, Audit, Benjamin, Haftek-Terreau, Zofia, Marilley, Monique, Bouvet, Philippe, Argoul, Françoise, Arneodo, Alain
Published 2009

Functional Coupling between HIV-1 Integrase and the SWI/SNF Chromatin Remodeling Complex for Efficient in vitro Integration into Stable Nucleosomes

by Lesbats, Paul, Botbol, Yair, Chevereau, Guillaume, Vaillant, Cédric, Calmels, Christina, Arneodo, Alain, Andreola, Marie-Line, Lavigne, Marc, Parissi, Vincent
Published 2011

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy

by Amzallag, Arnaud, Vaillant, Cédric, Jacob, Mathews, Unser, Michael, Bednar, Jan, Kahn, Jason D., Dubochet, Jacques, Stasiak, Andrzej, Maddocks, John H.
Published 2006

Tumble Kinematics of Escherichia coli near a Solid Surface

by Lemelle, Laurence, Cajgfinger, Thomas, Nguyen, Cao Cuong, Dominjon, Agnès, Place, Christophe, Chatre, Elodie, Barbier, Rémi, Palierne, Jean-François, Vaillant, Cédric
Published in Biophys J (2020)

Mechanics of the IL2RA Gene Activation Revealed by Modeling and Atomic Force Microscopy

by Milani, Pascale, Marilley, Monique, Sanchez-Sevilla, Albert, Imbert, Jean, Vaillant, Cédric, Argoul, Françoise, Egly, Jean-Marc, Rocca-Serra, José, Arneodo, Alain
Published 2011

Global chromatin conformation differences in the Drosophila dosage compensated chromosome X

by Pal, Koustav, Forcato, Mattia, Jost, Daniel, Sexton, Thomas, Vaillant, Cédric, Salviato, Elisa, Mazza, Emilia Maria Cristina, Lugli, Enrico, Cavalli, Giacomo, Ferrari, Francesco
Published in Nat Commun (2019)

Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes

by Socol, Marius, Wang, Renjie, Jost, Daniel, Carrivain, Pascal, Vaillant, Cédric, Le Cam, Eric, Dahirel, Vincent, Normand, Christophe, Bystricky, Kerstin, Victor, Jean-Marc, Gadal, Olivier, Bancaud, Aurélien
Published in Nucleic Acids Res (2019)

DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity

by Naughtin, Monica, Haftek-Terreau, Zofia, Xavier, Johan, Meyer, Sam, Silvain, Maud, Jaszczyszyn, Yan, Levy, Nicolas, Miele, Vincent, Benleulmi, Mohamed Salah, Ruff, Marc, Parissi, Vincent, Vaillant, Cédric, Lavigne, Marc
Published in PLoS One (2015)

Intasome architecture and chromatin density modulate retroviral integration into nucleosome

by Benleulmi, Mohamed Salah, Matysiak, Julien, Henriquez, Daniel Rodrigo, Vaillant, Cédric, Lesbats, Paul, Calmels, Christina, Naughtin, Monica, Leon, Oscar, Skalka, Anna Marie, Ruff, Marc, Lavigne, Marc, Andreola, Marie-Line, Parissi, Vincent
Published in Retrovirology (2015)