Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing

Por Trombetta, John J., Gennert, David, Lu, Diana, Satija, Rahul, Shalek, Alex K., Regev, Aviv
Publicado no Curr Protoc Mol Biol (2014)

In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9

Por Swiech, Lukasz, Heidenreich, Matthias, Banerjee, Abhishek, Habib, Naomi, Li, Yinqing, Trombetta, John, Sur, Mriganka, Zhang, Feng
Publicado no Nat Biotechnol (2014)

Div-Seq: Single nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

Por Habib, Naomi, Li, Yinqing, Heidenreich, Matthias, Swiech, Lukasz, Avraham-Davidi, Inbal, Trombetta, John J., Hession, Cynthia, Zhang, Feng, Regev, Aviv
Publicado no Science (2016)

Pathogen Cell-to-cell Variability Drives Heterogeneity In Host Immune Responses

Por Avraham, Roi, Haseley, Nathan, Brown, Douglas, Penaranda, Cristina, Jijon, Humberto B, Trombetta, John J, Satija, Rahul, Shalek, Alex K, Xavier, Ramnik, Regev, Aviv, Hung, Deborah T
Publicado no Cell (2015)

Deconstructing transcriptional heterogeneity in pluripotent stem cells

Por Kumar, Roshan M., Cahan, Patrick, Shalek, Alex K., Satija, Rahul, DaleyKeyser, AJay, Li, Hu, Zhang, Jin, Pardee, Keith, Gennert, David, Trombetta, John J., Ferrante, Thomas C., Regev, Aviv, Daley, George Q., Collins, James J.
Publicado no Nature (2014)

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

Por Shalek, Alex K., Satija, Rahul, Adiconis, Xian, Gertner, Rona S., Gaublomme, Jellert T., Raychowdhury, Raktima, Schwartz, Schragi, Yosef, Nir, Malboeuf, Christine, Lu, Diana, Trombetta, John T., Gennert, Dave, Gnirke, Andreas, Goren, Alon, Hacohen, Nir, Levin, Joshua Z., Park, Hongkun, Regev, Aviv
Publicado em 2013

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

Por Patel, Anoop P., Tirosh, Itay, Trombetta, John J., Shalek, Alex K., Gillespie, Shawn M., Wakimoto, Hiroaki, Cahill, Daniel P., Nahed, Brian V., Curry, William T., Martuza, Robert L., Louis, David N., Rozenblatt-Rosen, Orit, Suvà, Mario L., Regev, Aviv, Bernstein, Bradley E.
Publicado em 2014

Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets

Por Macosko, Evan Z., Basu, Anindita, Satija, Rahul, Nemesh, James, Shekhar, Karthik, Goldman, Melissa, Tirosh, Itay, Bialas, Allison R., Kamitaki, Nolan, Martersteck, Emily M., Trombetta, John J., Weitz, David A., Sanes, Joshua R., Shalek, Alex K., Regev, Aviv, McCarroll, Steven A.
Publicado no Cell (2015)

Single cell RNA Seq reveals dynamic paracrine control of cellular variation

Por Shalek, Alex K., Satija, Rahul, Shuga, Joe, Trombetta, John J., Gennert, Dave, Lu, Diana, Chen, Peilin, Gertner, Rona S., Gaublomme, Jellert T., Yosef, Nir, Schwartz, Schraga, Fowler, Brian, Weaver, Suzanne, Wang, Jing, Wang, Xiaohui, Ding, Ruihua, Raychowdhury, Raktima, Friedman, Nir, Hacohen, Nir, Park, Hongkun, May, Andrew P., Regev, Aviv
Publicado em 2014

Landscape of stimulation-responsive chromatin across diverse human immune cells

Por Calderon, Diego, Nguyen, Michelle L. T., Mezger, Anja, Kathiria, Arwa, Müller, Fabian, Nguyen, Vinh, Lescano, Ninnia, Wu, Beijing, Trombetta, John, Ribado, Jessica V., Knowles, David A., Gao, Ziyue, Blaeschke, Franziska, Parent, Audrey V., Burt, Trevor D., Anderson, Mark S., Criswell, Lindsey A., Greenleaf, William J., Marson, Alexander, Pritchard, Jonathan K.
Publicado no Nat Genet (2019)

Dynamic regulatory network controlling Th17 cell differentiation

Por Yosef, Nir, Shalek, Alex K., Gaublomme, Jellert T., Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Lu, Diana Y., Trombetta, John J., Pillai, Meenu R., Ratcliffe, Peter J., Coleman, Mathew L., Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K., Regev, Aviv
Publicado em 2013

The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation

Por Wallrapp, Antonia, Riesenfeld, Samantha J., Burkett, Patrick R., Abdulnour, Raja-Elie E., Nyman, Jackson, Dionne, Danielle, Hofree, Matan, Cuoco, Michael S., Rodman, Christopher, Farouq, Daneyal, Haas, Brian J., Tickle, Timothy L., Trombetta, John J., Baral, Pankaj, Klose, Christoph S. N., Mahlakõiv, Tanel, Artis, David, Rozenblatt-Rosen, Orit, Chiu, Isaac M., Levy, Bruce D., Kowalczyk, Monika S., Regev, Aviv, Kuchroo, Vijay K.
Publicado no Nature (2017)

Whole exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer

Por Lohr, Jens G., Adalsteinsson, Viktor A., Cibulskis, Kristian, Choudhury, Atish D., Rosenberg, Mara, Cruz-Gordillo, Peter, Francis, Joshua, Zhang, Cheng-Zhong, Shalek, Alex K., Satija, Rahul, Trombetta, John T., Lu, Diana, Tallapragada, Naren, Tahirova, Narmin, Kim, Sora, Blumenstiel, Brendan, Sougnez, Carrie, Lowe, Alarice, Wong, Bang, Auclair, Daniel, Van Allen, Eliezer M., Nakabayashi, Mari, Lis, Rosina T., Lee, Gwo-Shu M., Li, Tiantian, Chabot, Matthew S., Ly, Amy, Taplin, Mary-Ellen, Clancy, Thomas E., Loda, Massimo, Regev, Aviv, Meyerson, Matthew, Hahn, William C., Kantoff, Philip W., Golub, Todd R., Getz, Gad, Boehm, Jesse S., Love, J. Christopher
Publicado em 2014

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

Por Tirosh, Itay, Izar, Benjamin, Prakadan, Sanjay M., Wadsworth, Marc H., Treacy, Daniel, Trombetta, John J., Rotem, Asaf, Rodman, Christopher, Lian, Christine, Murphy, George, Fallahi-Sichani, Mohammad, Dutton-Regester, Ken, Lin, Jia-Ren, Cohen, Ofir, Shah, Parin, Lu, Diana, Genshaft, Alex S., Hughes, Travis K., Ziegler, Carly G. K., Kazer, Samuel W., Gaillard, Aleth, Kolb, Kellie E., Villani, Alexandra-Chloé, Johannessen, Cory M., Andreev, Aleksandr Y., Van Allen, Eliezer M., Bertagnolli, Monica, Sorger, Peter K., Sullivan, Ryan J., Flaherty, Keith T., Frederick, Dennie T., Jané-Valbuena, Judit, Yoon, Charles H., Rozenblatt-Rosen, Orit, Shalek, Alex K., Regev, Aviv, Garraway, Levi A.
Publicado no Science (2016)