Unlocking the efficiency of genomics laboratories with robotic liquid-handling

gan Tegally, Houriiyah, San, James Emmanuel, Giandhari, Jennifer, de Oliveira, Tulio
Cyhoeddwyd yn BMC Genomics (2020)

Discovering novel driver mutations from pan-cancer analysis of mutational and gene expression profiles

gan Tegally, Houriiyah, Kensler, Kevin H., Mungloo-Dilmohamud, Zahra, Ghoorah, Anisah W., Rebbeck, Timothy R., Baichoo, Shakuntala
Cyhoeddwyd yn PLoS One (2020)

Multiple Early Introductions of SARS-CoV-2 to Cape Town, South Africa

gan Engelbrecht, Susan, Delaney, Kayla, Kleinhans, Bronwyn, Wilkinson, Eduan, Tegally, Houriiyah, Stander, Tania, van Zyl, Gert, Preiser, Wolfgang, de Oliveira, Tulio
Cyhoeddwyd yn Viruses (2021)

High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity

gan James, San Emmanuel, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
Cyhoeddwyd yn medRxiv (2020)

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

gan Fischer, Will, Giorgi, Elena E., Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A., Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T., Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Gnanakaran, Sandrasegaram, Korber, Bette
Cyhoeddwyd yn Cell Host Microbe (2021)

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

gan Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carlos, de Oliveira, Tulio
Cyhoeddwyd yn Genes (Basel) (2020)

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

gan Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenco, Jose, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carols, Petruccione, Francesco, de Oliveira, Tulio
Cyhoeddwyd yn medRxiv (2020)

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

gan Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio
Cyhoeddwyd yn Int J Infect Dis (2021)

Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa

gan San, James E, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Nelson, Chase W, Smidt, Werner, Kiran, Anmol M, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Martin, Darren P, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
Cyhoeddwyd yn Virus Evol (2021)

SARS-CoV-2 501Y.V2 (B.1.351) elicits cross-reactive neutralizing antibodies

gan Moyo-Gwete, Thandeka, Madzivhandila, Mashudu, Makhado, Zanele, Ayres, Frances, Mhlanga, Donald, Oosthuysen, Brent, Lambson, Bronwen E., Kgagudi, Prudence, Tegally, Houriiyah, Iranzadeh, Arash, Doolabh, Deelan, Tyers, Lynn, Chinhoyi, Lionel R., Mennen, Mathilda, Skelem, Sango, Marais, Gert, Wibmer, Constantinos Kurt, Bhiman, Jinal N, Ueckermann, Veronica, Rossouw, Theresa, Boswell, Michael, de Oliveira, Tulio, Williamson, Carolyn, Burgers, Wendy A, Ntusi, Ntobeko, Morris, Lynn, Moore, Penny L
Cyhoeddwyd yn bioRxiv (2021)

Cross-Reactive Neutralizing Antibody Responses Elicited by SARS-CoV-2 501Y.V2 (B.1.351)

gan Moyo-Gwete, Thandeka, Madzivhandila, Mashudu, Makhado, Zanele, Ayres, Frances, Mhlanga, Donald, Oosthuysen, Brent, Lambson, Bronwen E., Kgagudi, Prudence, Tegally, Houriiyah, Iranzadeh, Arash, Doolabh, Deelan, Tyers, Lynn, Chinhoyi, Lionel R., Mennen, Mathilda, Skelem, Sango, Marais, Gert, Wibmer, Constantinos K., Bhiman, Jinal N., Ueckermann, Veronica, Rossouw, Theresa, Boswell, Michael, de Oliveira, Tulio, Williamson, Carolyn, Burgers, Wendy A., Ntusi, Ntobeko, Morris, Lynn, Moore, Penny L.
Cyhoeddwyd yn N Engl J Med (2021)

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern

gan Vogels, Chantal B.F., Breban, Mallery I., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Ott, Isabel M., de Jesus, Jaqueline Goes, Claro, Ingra Morales, Ferreira, Giulia Magalhães, Crispim, Myuki A.E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Cyhoeddwyd yn medRxiv (2021)

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2

gan Vogels, Chantal B. F., Breban, Mallery I., Ott, Isabel M., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Kalinich, Chaney C., Earnest, Rebecca, Rothman, Jessica E., Goes de Jesus, Jaqueline, Morales Claro, Ingra, Magalhães Ferreira, Giulia, Crispim, Myuki A. E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Cyhoeddwyd yn PLoS Biol (2021)

Efficacy of the ChAdOx1 nCoV-19 Covid-19 Vaccine against the B.1.351 Variant

gan Madhi, Shabir A., Baillie, Vicky, Cutland, Clare L., Voysey, Merryn, Koen, Anthonet L., Fairlie, Lee, Padayachee, Sherman D., Dheda, Keertan, Barnabas, Shaun L., Bhorat, Qasim E., Briner, Carmen, Kwatra, Gaurav, Ahmed, Khatija, Aley, Parvinder, Bhikha, Sutika, Bhiman, Jinal N., Bhorat, As’ad E., du Plessis, Jeanine, Esmail, Aliasgar, Groenewald, Marisa, Horne, Elizea, Hwa, Shi-Hsia, Jose, Aylin, Lambe, Teresa, Laubscher, Matt, Malahleha, Mookho, Masenya, Masebole, Masilela, Mduduzi, McKenzie, Shakeel, Molapo, Kgaogelo, Moultrie, Andrew, Oelofse, Suzette, Patel, Faeezah, Pillay, Sureshnee, Rhead, Sarah, Rodel, Hylton, Rossouw, Lindie, Taoushanis, Carol, Tegally, Houriiyah, Thombrayil, Asha, van Eck, Samuel, Wibmer, Constantinos K., Durham, Nicholas M., Kelly, Elizabeth J., Villafana, Tonya L., Gilbert, Sarah, Pollard, Andrew J., de Oliveira, Tulio, Moore, Penny L., Sigal, Alex, Izu, Alane
Cyhoeddwyd yn N Engl J Med (2021)

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

gan O'Toole, Áine, Hill, Verity, Pybus, Oliver G., Watts, Alexander, Bogoch, Issac I., Khan, Kamran, Messina, Jane P., Tegally, Houriiyah, Lessells, Richard R., Giandhari, Jennifer, Pillay, Sureshnee, Tumedi, Kefentse Arnold, Nyepetsi, Gape, Kebabonye, Malebogo, Matsheka, Maitshwarelo, Mine, Madisa, Tokajian, Sima, Hassan, Hamad, Salloum, Tamara, Merhi, Georgi, Koweyes, Jad, Geoghegan, Jemma L., de Ligt, Joep, Ren, Xiaoyun, Storey, Matthew, Freed, Nikki E., Pattabiraman, Chitra, Prasad, Pramada, Desai, Anita S., Vasanthapuram, Ravi, Schulz, Thomas F., Steinbrück, Lars, Stadler, Tanja, Parisi, Antonio, Bianco, Angelica, García de Viedma, Darío, Buenestado-Serrano, Sergio, Borges, Vítor, Isidro, Joana, Duarte, Sílvia, Gomes, João Paulo, Zuckerman, Neta S., Mandelboim, Michal, Mor, Orna, Seemann, Torsten, Arnott, Alicia, Draper, Jenny, Gall, Mailie, Rawlinson, William, Deveson, Ira, Schlebusch, Sanmarié, McMahon, Jamie, Leong, Lex, Lim, Chuan Kok, Chironna, Maria, Loconsole, Daniela, Bal, Antonin, Josset, Laurence, Holmes, Edward, St. George, Kirsten, Lasek-Nesselquist, Erica, Sikkema, Reina S., Oude Munnink, Bas, Koopmans, Marion, Brytting, Mia, Sudha rani, V., Pavani, S., Smura, Teemu, Heim, Albert, Kurkela, Satu, Umair, Massab, Salman, Muhammad, Bartolini, Barbara, Rueca, Martina, Drosten, Christian, Wolff, Thorsten, Silander, Olin, Eggink, Dirk, Reusken, Chantal, Vennema, Harry, Park, Aekyung, Carrington, Christine, Sahadeo, Nikita, Carr, Michael, Gonzalez, Gabo, de Oliveira, Tulio, Faria, Nuno, Rambaut, Andrew, Kraemer, Moritz U. G.
Cyhoeddwyd yn Wellcome Open Res (2021)

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

gan Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E., Lessells, Richard, Cuadros, Diego, Martin, Darren P., Rasmussen, David A., Zekri, Abdel-Rahman N., Sangare, Abdoul K., Ouedraogo, Abdoul-Salam, Sesay, Abdul K., Priscilla, Abechi, Kemi, Adedotun-Sulaiman, Olubusuyi, Adewunmi M., Oluwapelumi, Adeyemi O. O., Hammami, Adnène, Amuri, Adrienne A., Sayed, Ahmad, Ouma, Ahmed E. O., Elargoubi, Aida, Ajayi, Nnennaya A., Victoria, Ajogbasile F., Kazeem, Akano, George, Akpede, Trotter, Alexander J., Yahaya, Ali A., Keita, Alpha K., Diallo, Amadou, Kone, Amadou, Souissi, Amal, Chtourou, Amel, Gutierrez, Ana V., Page, Andrew J., Vinze, Anika, Iranzadeh, Arash, Lambisia, Arnold, Ismail, Arshad, Rosemary, Audu, Sylverken, Augustina, Femi, Ayoade, Ibrahimi, Azeddine, Marycelin, Baba, Oderinde, Bamidele S., Bolajoko, Bankole, Dhaala, Beatrice, Herring, Belinda L., Njanpop-Lafourcade, Berthe-Marie, Kleinhans, Bronwyn, McInnis, Bronwyn, Tegomoh, Bryan, Brook, Cara, Pratt, Catherine B., Scheepers, Cathrine, Akoua-Koffi, Chantal G., Agoti, Charles N., Peyrefitte, Christophe, Daubenberger, Claudia, Morang’a, Collins M., Nokes, D. James, Amoako, Daniel G., Bugembe, Daniel L., Park, Danny, Baker, David, Doolabh, Deelan, Ssemwanga, Deogratius, Tshiabuila, Derek, Bassirou, Diarra, Amuzu, Dominic S. Y., Goedhals, Dominique, Omuoyo, Donwilliams O., Maruapula, Dorcas, Foster-Nyarko, Ebenezer, Lusamaki, Eddy K., Simulundu, Edgar, Ong’era, Edidah M., Ngabana, Edith N., Shumba, Edwin, El Fahime, Elmostafa, Lokilo, Emmanuel, Mukantwari, Enatha, Philomena, Eromon, Belarbi, Essia, Simon-Loriere, Etienne, Anoh, Etilé A., Leendertz, Fabian, Ajili, Faida, Enoch, Fakayode O., Wasfi, Fares, Abdelmoula, Fatma, Mosha, Fausta S., Takawira, Faustinos T., Derrar, Fawzi, Bouzid, Feriel, Onikepe, Folarin, Adeola, Fowotade, Muyembe, Francisca M., Tanser, Frank, Dratibi, Fred A., Mbunsu, Gabriel K., Thilliez, Gaetan, Kay, Gemma L., Githinji, George, van Zyl, Gert, Awandare, Gordon A., Schubert, Grit, Maphalala, Gugu P., Ranaivoson, Hafaliana C., Lemriss, Hajar, Anise, Happi, Abe, Haruka, Karray, Hela H., Nansumba, Hellen, Elgahzaly, Hesham A., Gumbo, Hlanai, Smeti, Ibtihel, Ayed, Ikhlas B., Odia, Ikponmwosa, Ben Boubaker, Ilhem Boutiba, Gaaloul, Imed, Gazy, Inbal, Mudau, Innocent, Ssewanyana, Isaac, Konstantinus, Iyaloo, Lekana-Douk, Jean B., Makangara, Jean-Claude C., Tamfum, Jean-Jacques M., Heraud, Jean-Michel, Shaffer, Jeffrey G., Giandhari, Jennifer, Li, Jingjing, Yasuda, Jiro, Mends, Joana Q., Kiconco, Jocelyn, Morobe, John M., Gyapong, John O., Okolie, Johnson C., Kayiwa, John T., Edwards, Johnathan A., Gyamfi, Jones, Farah, Jouali, Nakaseegu, Joweria, Ngoi, Joyce M., Namulondo, Joyce, Andeko, Julia C., Lutwama, Julius J., O’Grady, Justin, Siddle, Katherine, Adeyemi, Kayode T., Tumedi, Kefentse A., Said, Khadija M., Hae-Young, Kim, Duedu, Kwabena O., Belyamani, Lahcen, Fki-Berrajah, Lamia, Singh, Lavanya, Martins, Leonardo de O., Tyers, Lynn, Ramuth, Magalutcheemee, Mastouri, Maha, Aouni, Mahjoub, el Hefnawi, Mahmoud, Matsheka, Maitshwarelo I., Kebabonye, Malebogo, Diop, Mamadou, Turki, Manel, Paye, Marietou, Nyaga, Martin M., Mareka, Mathabo, Damaris, Matoke-Muhia, Mburu, Maureen W., Mpina, Maximillian, Nwando, Mba, Owusu, Michael, Wiley, Michael R., Youtchou, Mirabeau T., Ayekaba, Mitoha O., Abouelhoda, Mohamed, Seadawy, Mohamed G., Khalifa, Mohamed K., Sekhele, Mooko, Ouadghiri, Mouna, Diagne, Moussa M., Mwenda, Mulenga, Allam, Mushal, Phan, My V. T., Abid, Nabil, Touil, Nadia, Rujeni, Nadine, Kharrat, Najla, Ismael, Nalia, Dia, Ndongo, Mabunda, Nedio, Hsiao, Nei-yuan, Silochi, Nelson B., Nsenga, Ngoy, Gumede, Nicksy, Mulder, Nicola, Ndodo, Nnaemeka, Razanajatovo, Norosoa H, Iguosadolo, Nosamiefan, Judith, Oguzie, Kingsley, Ojide C., Sylvanus, Okogbenin, Peter, Okokhere, Femi, Oladiji, Idowu, Olawoye, Testimony, Olumade, Chukwuma, Omoruyi E., Ogah, Onwe E., Onwuamah, Chika K., Cyril, Oshomah, Faye, Ousmane, Tomori, Oyewale, Ondoa, Pascale, Combe, Patrice, Semanda, Patrick, Oluniyi, Paul E., Arnaldo, Paulo, Quashie, Peter K., Dussart, Philippe, Bester, Phillip A., Mbala, Placide K., Ayivor-Djanie, Reuben, Njouom, Richard, Phillips, Richard O., Gorman, Richmond, Kingsley, Robert A., Carr, Rosina A. A., El Kabbaj, Saâd, Gargouri, Saba, Masmoudi, Saber, Sankhe, Safietou, Lawal, Salako B., Kassim, Samar, Trabelsi, Sameh, Metha, Samar, Kammoun, Sami, Lemriss, Sanaâ, Agwa, Sara H. A., Calvignac-Spencer, Sébastien, Schaffner, Stephen F., Doumbia, Seydou, Mandanda, Sheila M., Aryeetey, Sherihane, Ahmed, Shymaa S., Elhamoumi, Siham, Andriamandimby, Soafy, Tope, Sobajo, Lekana-Douki, Sonia, Prosolek, Sophie, Ouangraoua, Soumeya, Mundeke, Steve A., Rudder, Steven, Panji, Sumir, Pillay, Sureshnee, Engelbrecht, Susan, Nabadda, Susan, Behillil, Sylvie, Budiaki, Sylvie L., van der Werf, Sylvie, Mashe, Tapfumanei, Aanniz, Tarik, Mohale, Thabo, Le-Viet, Thanh, Schindler, Tobias, Anyaneji, Ugochukwu J., Chinedu, Ugwu, Ramphal, Upasana, Jessica, Uwanibe, George, Uwem, Fonseca, Vagner, Enouf, Vincent, Gorova, Vivianne, Roshdy, Wael H., Ampofo, William K., Preiser, Wolfgang, Choga, Wonderful T., Bediako, Yaw, Naidoo, Yeshnee, Butera, Yvan, de Laurent, Zaydah R., Sall, Amadou A., Rebai, Ahmed, von Gottberg, Anne, Kouriba, Bourema, Williamson, Carolyn, Bridges, Daniel J., Chikwe, Ihekweazu, Bhiman, Jinal N., Mine, Madisa, Cotten, Matthew, Moyo, Sikhulile, Gaseitsiwe, Simani, Saasa, Ngonda, Sabeti, Pardis C., Kaleebu, Pontiano, Tebeje, Yenew K., Tessema, Sofonias K., Happi, Christian, Nkengasong, John, de Oliveira, Tulio
Cyhoeddwyd yn Science (2021)