HIV-1 Drug Resistance Genotyping in Resource Limited Settings: Current and Future Perspectives in Sequencing Technologies

著者: Manyana, Sontaga, Gounder, Lilishia, Pillay, Melendhran, Manasa, Justen, Naidoo, Kogieleum, Chimukangara, Benjamin
出版年 Viruses (2021)

A Simple Phosphate-Buffered-Saline-Based Extraction Method Improves Specificity of HIV Viral Load Monitoring Using Dried Blood Spots

著者: Makadzange, A. Tariro, Boyd, F. Kathryn, Chimukangara, Benjamin, Masimirembwa, Collen, Katzenstein, David, Ndhlovu, Chiratidzo E.
出版年 J Clin Microbiol (2017)

Next Generation Sequencing and Bioinformatics Analysis of Family Genetic Inheritance

著者: Kanzi, Aquillah M., San, James Emmanuel, Chimukangara, Benjamin, Wilkinson, Eduan, Fish, Maryam, Ramsuran, Veron, de Oliveira, Tulio
出版年 Front Genet (2020)

HIV drug resistance testing among patients failing second line antiretroviral therapy. Comparison of in-house and commercial sequencing

著者: Chimukangara, Benjamin, Varyani, Bhavini, Shamu, Tinei, Mutsvangwa, Junior, Manasa, Justen, White, Elizabeth, Chimbetete, Cleophas, Luethy, Ruedi, Katzenstein, David
出版年 J Virol Methods (2016)

Recurrent tuberculosis among HIV-coinfected patients: a case series from KwaZulu-Natal

著者: Naidoo, Kogieleum, Dookie, Navisha, Naidoo, Kasavan, Yende-Zuma, Nonhlanhla, Chimukangara, Benjamin, Bhushan, Ambika, Govender, Dhineshree, Gengiah, Santhanalakshmi, Padayatchi, Nesri
出版年 Infect Drug Resist (2018)

Use of Proviral DNA to Investigate Virus Resistance Mutations in HIV-infected Zimbabweans

著者: Musingwini, Tutsirai V., Zhou, Danai T., Mhandire, Doreen, Duri, Kerina, Gomo, Exnevia, Oktedalen, Olav, Chimukangara, Benjamin, Shamu, Tinei, Shawarira-Bote, Sandra, Dandara, Collet, Stray-Pedersen, Babill
出版年 Open Microbiol J (2017)

Impact of pretreatment low-abundance HIV-1 drug-resistant variants on virological failure among HIV-1/TB-co-infected individuals

著者: Chimukangara, Benjamin, Giandhari, Jennifer, Lessells, Richard, Yende-Zuma, Nonhlanhla, Sartorius, Benn, Samuel, Reshmi, Khanyile, Khulekani S, Stray-Pedersen, Babill, Moodley, Pravi, Metzner, Karin J, Padayatchi, Nesri, Naidoo, Kogieleum, De Oliveira, Tulio
出版年 J Antimicrob Chemother (2020)

High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity

著者: James, San Emmanuel, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
出版年 medRxiv (2020)

Reduced efficacy of HIV-1 integrase inhibitors in patients with drug resistance mutations in reverse transcriptase

著者: Siedner, Mark J., Moorhouse, Michelle A., Simmons, Bryony, de Oliveira, Tulio, Lessells, Richard, Giandhari, Jennifer, Kemp, Stephen A., Chimukangara, Benjamin, Akpomiemie, Godspower, Serenata, Celicia M., Venter, Willem D. F., Hill, Andrew, Gupta, Ravindra K.
出版年 Nat Commun (2020)

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic

著者: Pillay, Sureshnee, Giandhari, Jennifer, Tegally, Houriiyah, Wilkinson, Eduan, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Mattison, Stacey, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, San, James Emmanuel, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carlos, de Oliveira, Tulio
出版年 Genes (Basel) (2020)

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

著者: Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenco, Jose, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Khanyile, Khulekani Sedwell, Fonseca, Vagner, Giovanetti, Marta, Alcantara, Luiz Carols, Petruccione, Francesco, de Oliveira, Tulio
出版年 medRxiv (2020)

Moderate-to-High Levels of Pretreatment HIV Drug Resistance in KwaZulu-Natal Province, South Africa

著者: Chimukangara, Benjamin, Kharsany, Ayesha B.M., Lessells, Richard J., Naidoo, Kogieleum, Rhee, Soo-Yon, Manasa, Justen, Gräf, Tiago, Lewis, Lara, Cawood, Cherie, Khanyile, David, Diallo, Karidia, Ayalew, Kassahun A., Shafer, Robert W., Hunt, Gillian, Pillay, Deenan, Abdool, Salim Karim, de Oliveira, Tulio
出版年 AIDS Res Hum Retroviruses (2019)

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

著者: Giandhari, Jennifer, Pillay, Sureshnee, Wilkinson, Eduan, Tegally, Houriiyah, Sinayskiy, Ilya, Schuld, Maria, Lourenço, José, Chimukangara, Benjamin, Lessells, Richard, Moosa, Yunus, Gazy, Inbal, Fish, Maryam, Singh, Lavanya, Sedwell Khanyile, Khulekani, Fonseca, Vagner, Giovanetti, Marta, Carlos Junior Alcantara, Luiz, Petruccione, Francesco, de Oliveira, Tulio
出版年 Int J Infect Dis (2021)

Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa

著者: San, James E, Ngcapu, Sinaye, Kanzi, Aquillah M, Tegally, Houriiyah, Fonseca, Vagner, Giandhari, Jennifer, Wilkinson, Eduan, Nelson, Chase W, Smidt, Werner, Kiran, Anmol M, Chimukangara, Benjamin, Pillay, Sureshnee, Singh, Lavanya, Fish, Maryam, Gazy, Inbal, Martin, Darren P, Khanyile, Khulekani, Lessells, Richard, de Oliveira, Tulio
出版年 Virus Evol (2021)

Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000–2016: A Pooled Sequence Analysis

著者: Chimukangara, Benjamin, Lessells, Richard J., Rhee, Soo-Yon, Giandhari, Jennifer, Kharsany, Ayesha B.M., Naidoo, Kogieleum, Lewis, Lara, Cawood, Cherie, Khanyile, David, Ayalew, Kassahun A., Diallo, Karidia, Samuel, Reshmi, Hunt, Gillian, Vandormael, Alain, Stray-Pedersen, Babill, Gordon, Michelle, Makadzange, Tariro, Kiepiela, Photini, Ramjee, Gita, Ledwaba, Johanna, Kalimashe, Monalisa, Morris, Lynn, Parikh, Urvi M., Mellors, John W., Shafer, Robert W., Katzenstein, David, Moodley, Pravi, Gupta, Ravindra K., Pillay, Deenan, Abdool Karim, Salim S., de Oliveira, Tulio
出版年 EClinicalMedicine (2019)