Sequencing SARS-CoV-2 Genomes from Saliva

by Alpert, Tara, Vogels, Chantal B.F., Breban, Mallery I., Petrone, Mary E., Wyllie, Anne L., Grubaugh, Nathan D., Fauver, Joseph R.
Published in medRxiv (2021)

A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice

by Mao, Tianyang, Israelow, Benjamin, Lucas, Carolina, Vogels, Chantal B. F., Fedorova, Olga, Breban, Mallery I., Menasche, Bridget L., Dong, Huiping, Linehan, Melissa, Wilen, Craig B., Landry, Marie L., Grubaugh, Nathan D., Pyle, Anna M., Iwasaki, Akiko
Published in bioRxiv (2021)

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern

by Vogels, Chantal B.F., Breban, Mallery I., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Ott, Isabel M., de Jesus, Jaqueline Goes, Claro, Ingra Morales, Ferreira, Giulia Magalhães, Crispim, Myuki A.E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Published in medRxiv (2021)

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2

by Vogels, Chantal B. F., Breban, Mallery I., Ott, Isabel M., Alpert, Tara, Petrone, Mary E., Watkins, Anne E., Kalinich, Chaney C., Earnest, Rebecca, Rothman, Jessica E., Goes de Jesus, Jaqueline, Morales Claro, Ingra, Magalhães Ferreira, Giulia, Crispim, Myuki A. E., Singh, Lavanya, Tegally, Houriiyah, Anyaneji, Ugochukwu J., Hodcroft, Emma B., Mason, Christopher E., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., MacKay, Matthew J., Nash, Megan, Wang, Jianhui, Liu, Chen, Hui, Pei, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Landry, Marie L., Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, de Oliveira, Tulio, Faria, Nuno R., Sabino, Ester C., Neher, Richard A., Fauver, Joseph R., Grubaugh, Nathan D.
Published in PLoS Biol (2021)

Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages

by Petrone, Mary E., Rothman, Jessica E., Breban, Mallery I., Ott, Isabel M., Russell, Alexis, Lasek-Nesselquist, Erica, Kelly, Kevin, Omerza, Greg, Renzette, Nicholas, Watkins, Anne E., Kalinich, Chaney C., Alpert, Tara, Brito, Anderson F., Earnest, Rebecca, Tikhonova, Irina R., Castaldi, Christopher, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Murphy, Steven, Neal, Caleb, Laszlo, Eva, Altajar, Ahmad, Pearson, Claire, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Niccolai, Linda, Wilson, Madeline S., Anderson, Margaret L., Wang, Jianhui, Liu, Chen, Hui, Pei, Mane, Shrikant, Taylor, Bradford P., Hanage, William P., Landry, Marie L., Peaper, David R., Bilguvar, Kaya, Fauver, Joseph R., Vogels, Chantal B.F., Gardner, Lauren M., Pitzer, Virginia E., St. George, Kirsten, Adams, Mark D., Grubaugh, Nathan D.
Published in medRxiv (2021)

Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States

by Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Fauntleroy, Kathy A., Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., George, Kirsten St., MacCannell, Duncan R., Grubaugh, Nathan D.
Published in medRxiv (2021)

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States

by Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Cong, Lin, Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., St. George, Kirsten, MacCannell, Duncan R., Grubaugh, Nathan D.
Published in Cell (2021)