2D Representation of Transcriptomes by t-SNE Exposes Relatedness between Human Tissues

by Taskesen, Erdogan, Reinders, Marcel J. T.
Published in PLoS One (2016)

An integrated approach of gene expression and DNA-methylation profiles of WNT signaling genes uncovers novel prognostic markers in Acute Myeloid Leukemia

by Taskesen, Erdogan, Staal, Frank JT, Reinders, Marcel JT
Published in BMC Bioinformatics (2015)

Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks

by Taskesen, Erdogan, Hoogeboezem, Remco, Delwel, Ruud, Reinders, Marcel JT
Published 2013

Functional mapping and annotation of genetic associations with FUMA

by Watanabe, Kyoko, Taskesen, Erdogan, van Bochoven, Arjen, Posthuma, Danielle
Published in Nat Commun (2017)

Integration of gene expression and DNA-methylation profiles improves molecular subtype classification in acute myeloid leukemia

by Taskesen, Erdogan, Babaei, Sepideh, Reinders, Marcel MJ, de Ridder, Jeroen
Published in BMC Bioinformatics (2015)

High Levels of Canonical Wnt Signaling Lead to Loss of Stemness and Increased Differentiation in Hematopoietic Stem Cells

by Famili, Farbod, Brugman, Martijn H., Taskesen, Erdogan, Naber, Brigitta E.A., Fodde, Riccardo, Staal, Frank J.T.
Published in Stem Cell Reports (2016)

HAT: Hypergeometric Analysis of Tiling-arrays with application to promoter-GeneChip data

by Taskesen, Erdogan, Beekman, Renee, de Ridder, Jeroen, Wouters, Bas J, Peeters, Justine K, Touw, Ivo P, Reinders, Marcel JT, Delwel, Ruud
Published 2010

Retroviral Integration Mutagenesis in Mice and Comparative Analysis in Human AML Identify Reduced PTP4A3 Expression as a Prognostic Indicator

by Beekman, Renée, Valkhof, Marijke, Erkeland, Stefan J., Taskesen, Erdogan, Rockova, Veronika, Peeters, Justine K., Valk, Peter J. M., Löwenberg, Bob, Touw, Ivo P.
Published 2011

Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics

by Taskesen, Erdogan, Huisman, Sjoerd M. H., Mahfouz, Ahmed, Krijthe, Jesse H., de Ridder, Jeroen, van de Stolpe, Anja, van den Akker, Erik, Verheagh, Wim, Reinders, Marcel J. T.
Published in Sci Rep (2016)

Author Correction: Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics

by Taskesen, Erdogan, Huisman, Sjoerd M. H., Mahfouz, Ahmed, Krijthe, Jesse H., de Ridder, Jeroen, van de Stolpe, Anja, van den Akker, Erik, Verhaegh, Wim, Reinders, Marcel J. T.
Published in Sci Rep (2018)

EVI1 is critical for the pathogenesis of a subset of MLL-AF9–rearranged AMLs

by Bindels, Eric M. J., Havermans, Marije, Lugthart, Sanne, Erpelinck, Claudia, Wocjtowicz, Elizabeth, Krivtsov, Andrei V., Rombouts, Elwin, Armstrong, Scott A., Taskesen, Erdogan, Haanstra, Jurgen R., Beverloo, H. Berna, Döhner, Hartmut, Hudson, Wendy A., Kersey, John H., Delwel, Ruud, Kumar, Ashish R.
Published 2012

MiR-17/20/93/106 promote hematopoietic cell expansion by targeting sequestosome 1–regulated pathways in mice

by Meenhuis, Annemarie, van Veelen, Peter A., de Looper, Hans, van Boxtel, Nicole, van den Berge, Iris J., Sun, Su M., Taskesen, Erdogan, Stern, Patrick, de Ru, Arnoud H., van Adrichem, Arjan J., Demmers, Jeroen, Jongen-Lavrencic, Mojca, Löwenberg, Bob, Touw, Ivo P., Sharp, Phillip A., Erkeland, Stefan J.
Published 2011

Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits

by Hammerschlag, Anke R, Stringer, Sven, de Leeuw, Christiaan A, Sniekers, Suzanne, Taskesen, Erdogan, Watanabe, Kyoko, Blanken, Tessa F, Dekker, Kim, te Lindert, Bart HW, Wassing, Rick, Jonsdottir, Ingileif, Thorleifsson, Gudmar, Stefansson, Hreinn, Gislason, Thorarinn, Berger, Klaus, Schormair, Barbara, Wellmann, Juergen, Winkelmann, Juliane, Stefansson, Kari, Oexle, Konrad, Van Someren, Eus JW, Posthuma, Danielle
Published in Nat Genet (2017)

Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence

by Sniekers, Suzanne, Stringer, Sven, Watanabe, Kyoko, Jansen, Philip R, Coleman, Jonathan RI, Krapohl, Eva, Taskesen, Erdogan, Hammerschlag, Anke R, Okbay, Aysu, Zabaneh, Delilah, Amin, Najaf, Breen, Gerome, Cesarini, David, Chabris, Christopher F, Iacono, William G, Ikram, M. Arfan, Johannesson, Magnus, Koellinger, Philipp, Lee, James J, Magnusson, Patrik K. E., McGue, Matt, Miller, Mike B., Ollier, William ER, Payton, Antony, Pendleton, Neil, Plomin, Robert, Rietveld, Cornelius A, Tiemeier, Henning, van Duijn, Cornelia M, Posthuma, Danielle
Published in Nat Genet (2017)

An epigenome-wide association study meta-analysis of educational attainment

by Karlsson Linnér, Richard, Marioni, Riccardo E, Rietveld, Cornelius A, Simpkin, Andrew J, Davies, Neil M, Watanabe, Kyoko, Armstrong, Nicola J, Auro, Kirsi, Baumbach, Clemens, Jan Bonder, Marc, Buchwald, Jadwiga, Fiorito, Giovanni, Ismail, Khadeeja, Iurato, Stella, Joensuu, Anni, Karell, Pauliina, Kasela, Silva, Lahti, Jari, McRae, Allan F, Mandaviya, Pooja R, Seppälä, Ilkka, Wang, Yunzhang, Baglietto, Laura, Binder, Elisabeth B, Harris, Sarah E, Hodge, Allison M, Horvath, Steve, Hurme, Mikko, Johannesson, Magnus, Latvala, Antti, Mather, Karen A, Medland, Sarah E, Metspalu, Andres, Milani, Lili, Milne, Roger L, Pattie, Alison, Pedersen, Nancy L, Peters, Annette, Polidoro, Silvia, Räikkönen, Katri, Severi, Gianluca, Starr, John M, Stolk, Lisette, Waldenberger, Melanie, Eriksson, Johan G, Esko, Tõnu, Franke, Lude, Gieger, Christian, Giles, Graham G, Hägg, Sara, Jousilahti, Pekka, Kaprio, Jaakko, Kähönen, Mika, Lehtimäki, Terho, Martin, Nicholas G, van Meurs, Joyce B C, Ollikainen, Miina, Perola, Markus, Posthuma, Danielle, Raitakari, Olli T, Sachdev, Perminder S, Taskesen, Erdogan, Uitterlinden, André G, Vineis, Paolo, Wijmenga, Cisca, Wright, Margaret J, Relton, Caroline, Davey Smith, George, Deary, Ian J, Koellinger, Philipp D, Benjamin, Daniel J
Published in Mol Psychiatry (2017)

Genome-wide association analyses of risk tolerance and risky behaviors in over one million individuals identify hundreds of loci and shared genetic influences

by Linnér, Richard Karlsson, Biroli, Pietro, Kong, Edward, Meddens, S Fleur W, Wedow, Robbee, Fontana, Mark Alan, Lebreton, Maël, Tino, Stephen P, Abdellaoui, Abdel, Hammerschlag, Anke R, Nivard, Michel G, Okbay, Aysu, Rietveld, Cornelius A, Timshel, Pascal N, Trzaskowski, Maciej, de Vlaming, Ronald, Zünd, Christian L, Bao, Yanchun, Buzdugan, Laura, Caplin, Ann H, Chen, Chia-Yen, Eibich, Peter, Fontanillas, Pierre, Gonzalez, Juan R, Joshi, Peter K, Karhunen, Ville, Kleinman, Aaron, Levin, Remy Z, Lill, Christina M, Meddens, Gerardus A, Muntané, Gerard, Sanchez-Roige, Sandra, van Rooij, Frank J, Taskesen, Erdogan, Wu, Yang, Zhang, Futao, Auton, Adam, Boardman, Jason D, Clark, David W, Conlin, Andrew, Dolan, Conor C, Fischbacher, Urs, Groenen, Patrick J F, Harris, Kathleen Mullan, Hasler, Gregor, Hofman, Albert, Ikram, Mohammad A, Jain, Sonia, Karlsson, Robert, Kessler, Ronald C, Kooyman, Maarten, MacKillop, James, Männikkö, Minna, Morcillo-Suarez, Carlos, McQueen, Matthew B, Schmidt, Klaus M, Smart, Melissa C, Sutter, Matthias, Thurik, A Roy, Uitterlinden, André G, White, Jon, de Wit, Harriet, Yang, Jian, Bertram, Lars, Boomsma, Dorret I, Esko, Tõnu, Fehr, Ernst, Hinds, David A, Johannesson, Magnus, Kumari, Meena, Laibson, David, Magnusson, Patrik K E, Meyer, Michelle N, Navarro, Arcadi, Palmer, Abraham A, Pers, Tune H, Posthuma, Danielle, Schunk, Daniel, Stein, Murray B, Svento, Rauli, Tiemeier, Henning, Timmers, Paul R H J, Turley, Patrick, Ursano, Robert J, Wagner, Gert G, Wilson, James F, Gratten, Jacob, Lee, James J, Cesarini, David, Benjamin, Daniel J, Koellinger, Philipp D, Beauchamp, Jonathan P
Published in Nat Genet (2019)