Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3

بواسطة McGovern, Rachel A., Harrigan, P. Richard, Swenson, Luke C.
منشور في 2010

“Dynamic Range” of Inferred Phenotypic HIV Drug Resistance Values in Clinical Practice

بواسطة Swenson, Luke C., Pollock, Graham, Wynhoven, Brian, Mo, Theresa, Dong, Winnie, Hogg, Robert S., Montaner, Julio S. G., Harrigan, P. Richard
منشور في 2011

Development of a Novel Codon-Specific Polymerase Chain Reaction for the Detection of CXCR4-Utilizing HIV Type 1 Subtype B

بواسطة McLaughlin, Sherry, Swenson, Luke C., Hu, Shengbo, Hughes, Paul, Harrigan, P. Richard, Coombs, Robert W., Frenkel, Lisa M.
منشور في 2013

Prolonged and Substantial Discordance in Prevalence of Raltegravir-Resistant HIV-1 in Plasma versus PBMC Samples Revealed by 454 “Deep” Sequencing

بواسطة Lee, Guinevere Q., Swenson, Luke C., Poon, Art F. Y., Martin, Jeffrey N., Hatano, Hiroyu, Deeks, Steven G., Harrigan, P. Richard
منشور في 2012

Technical and Regulatory Shortcomings of the TaqMan Version 1 HIV Viral Load Assay

بواسطة Brumme, Chanson J., Swenson, Luke C., Wynhoven, Brian, Yip, Benita, Skinner, Stuart, Lima, Viviane Dias, Montaner, Julio S. G., Harrigan, P. Richard
منشور في 2012

Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

بواسطة Poon, Art F. Y., Swenson, Luke C., Bunnik, Evelien M., Edo-Matas, Diana, Schuitemaker, Hanneke, van 't Wout, Angélique B., Harrigan, P. Richard
منشور في 2012

Results of External Quality Assessment for Proviral DNA Testing of HIV Tropism in the Maraviroc Switch Collaborative Study

بواسطة Tu, Elise, Swenson, Luke C., Land, Sally, Pett, Sarah, Emery, Sean, Marks, Kat, Kelleher, Anthony D., Kaye, Steve, Kaiser, Rolf, Schuelter, Eugene, Harrigan, Richard
منشور في 2013

Reply to “Issues on Results of the External Quality Assessment for Proviral DNA Testing of HIV-1 Tropism in the Maraviroc Switch Collaborative Study”

بواسطة Tu, Elise, Swenson, Luke C., Land, Sally, Pett, Sarah, Emery, Sean, Marks, Kat, Kelleher, Anthony D., Kaye, Steve, Kaiser, Rolf, Schuelter, Eugene, Harrigan, Richard
منشور في 2013

HIV Drug Resistance Detected During Low-Level Viremia Is Associated with Subsequent Virologic Failure

بواسطة Swenson, Luke C, Min, Jeong Eun, Woods, Conan K, Cai, Eric, Li, Jonathan Z, Montaner, Julio S.G., Harrigan, P. Richard, Gonzalez-Serna, Alejandro
الحاوية / القاعدة AIDS (2014)

“Deep” Sequencing Accuracy and Reproducibility Using Roche/454 Technology for Inferring Co-Receptor Usage in HIV-1

بواسطة Knapp, David J. H. F., McGovern, Rachel A., Poon, Art F. Y., Zhong, Xiaoyin, Chan, Dennison, Swenson, Luke C., Dong, Winnie, Harrigan, P. Richard
منشور في 2014

Factors Influencing the Sensitivity and Specificity of Conventional Sequencing in Human Immunodeficiency Virus Type 1 Tropism Testing

بواسطة Knapp, David J. H. F., McGovern, Rachel A., Dong, Winnie, Poon, Art F. Y., Swenson, Luke C., Zhong, Xiaoyin, Woods, Conan K., Harrigan, P. Richard
منشور في 2013

Detection of Inferred CCR5- and CXCR4-Using HIV-1 Variants and Evolutionary Intermediates Using Ultra-Deep Pyrosequencing

بواسطة Bunnik, Evelien M., Swenson, Luke C., Edo-Matas, Diana, Huang, Wei, Dong, Winnie, Frantzell, Arne, Petropoulos, Christos J., Coakley, Eoin, Schuitemaker, Hanneke, Harrigan, P. Richard, van 't Wout, Angélique B.
منشور في 2011

Deep Sequencing to Infer HIV-1 Co-Receptor Usage: Application to Three Clinical Trials of Maraviroc in Treatment-Experienced Patients

بواسطة Swenson, Luke C., Mo, Theresa, Dong, Winnie W.Y., Zhong, Xiaoyin, Woods, Conan K., Jensen, Mark A., Thielen, Alexander, Chapman, Douglass, Lewis, Marilyn, James, Ian, Heera, Jayvant, Valdez, Hernan, Harrigan, P. Richard
منشور في 2011

Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1

بواسطة Poon, Art F.Y., Swenson, Luke C., Dong, Winnie W.Y., Deng, Wenjie, Kosakovsky Pond, Sergei L., Brumme, Zabrina L., Mullins, James I., Richman, Douglas D., Harrigan, P. Richard, Frost, Simon D.W.
منشور في 2010

Risk of Breast Cancer with CXCR4-using HIV Defined by V3-Loop Sequencing

بواسطة Goedert, James J., Swenson, Luke C., Napolitano, Laura A., Haddad, Mojgan, Anastos, Kathryn, Minkoff, Howard, Young, Mary, Levine, Alexandra, Adeyemi, Oluwatoyin, Seaberg, Eric C., Aouizerat, Bradley, Rabkin, Charles S., Harrigan, P. Richard, Hessol, Nancy A.
الحاوية / القاعدة J Acquir Immune Defic Syndr (2015)

Genotypic Analysis of the V3 Region of HIV from Virologic Nonresponders to Maraviroc-Containing Regimens Reveals Distinct Patterns of Failure

بواسطة Swenson, Luke C., Chui, Celia K. S., Brumme, Chanson J., Chan, Dennison, Woods, Conan K., Mo, Theresa, Dong, Winnie, Chapman, Doug, Lewis, Marilyn, Demarest, James F., James, Ian, Portsmouth, Simon, Goodrich, James, Heera, Jayvant, Valdez, Hernan, Harrigan, P. Richard
منشور في 2013

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing

بواسطة Liang, Richard H., Mo, Theresa, Dong, Winnie, Lee, Guinevere Q., Swenson, Luke C., McCloskey, Rosemary M., Woods, Conan K., Brumme, Chanson J., Ho, Cynthia K.Y., Schinkel, Janke, Joy, Jeffrey B., Harrigan, P. Richard, Poon, Art F.Y.
منشور في 2014

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

بواسطة Brumme, Zabrina L., John, Mina, Carlson, Jonathan M., Brumme, Chanson J., Chan, Dennison, Brockman, Mark A., Swenson, Luke C., Tao, Iris, Szeto, Sharon, Rosato, Pamela, Sela, Jennifer, Kadie, Carl M., Frahm, Nicole, Brander, Christian, Haas, David W., Riddler, Sharon A., Haubrich, Richard, Walker, Bruce D., Harrigan, P. Richard, Heckerman, David, Mallal, Simon
منشور في 2009

Comparative Performances of HIV-1 RNA Load Assays at Low Viral Load Levels: Results of an International Collaboration

بواسطة Swenson, Luke C., Cobb, Bryan, Geretti, Anna Maria, Harrigan, P. Richard, Poljak, Mario, Seguin-Devaux, Carole, Verhofstede, Chris, Wirden, Marc, Amendola, Alessandra, Boni, Jurg, Bourlet, Thomas, Huder, Jon B., Karasi, Jean-Claude, Zidovec Lepej, Snjezana, Lunar, Maja M., Mukabayire, Odette, Schuurman, Rob, Tomažič, Janez, Van Laethem, Kristel, Vandekerckhove, Linos, Wensing, Annemarie M. J.
منشور في 2014