Microbiome heterogeneity characterizing intestinal tissue and inflammatory bowel disease phenotype

by Tyler, Andrea D., Kirsch, Richard, Milgrom, Raquel, Stempak, Joanne M., Kabakchiev, Boyko, Silverberg, Mark S.
Published in Inflamm Bowel Dis (2016)

Infliximab to Treat Refractory Inflammation After Pelvic Pouch Surgery for Ulcerative Colitis

by Kelly, Orlaith B., Rosenberg, Morgan, Tyler, Andrea D., Stempak, Joanne M., Steinhart, A. Hillary, Cohen, Zane, Greenberg, Gordon R., Silverberg, Mark S.
Published in J Crohns Colitis (2016)

Prevalence of genetic variants associated with inflammatory bowel disease in a healthy First Nations cohort

by Murdoch, Travis B., Bernstein, Charles N., El-Gabalawy, Hani, Stempak, Joanne M., Sargent, Michael, Elias, Brenda, Xu, Wei, Pathan, Saad, Silverberg, Mark S.
Published 2012

Distinct and Overlapping Genetic Loci in Crohn's Disease and Ulcerative Colitis: Correlations with Pathogenesis

by Waterman, Matti, Xu, Wei, Stempak, Joanne M., Milgrom, Raquel, Bernstein, Charles N., Griffiths, Anne M., Greenberg, Gordon R., Steinhart, A. Hillary, Silverberg, Mark S.
Published 2010

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

by Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis
Published in Genome Biol (2015)

Predictors of Outcome in Ulcerative Colitis

by Waterman, Matti, Knight, Jo, Dinani, Amreen, Xu, Wei, Stempak, Joanne M., Croitoru, Kenneth, Nguyen, Geoffrey C., Cohen, Zane, McLeod, Robin S., Greenberg, Gordon R., Steinhart, A. Hillary, Silverberg, Mark S.
Published in Inflamm Bowel Dis (2015)

Combination of Genetic and Quantitative Serological Immune Markers are Associated with Complicated Crohn’s Disease Behavior

by Lichtenstein, Gary R., Targan, Stephan R., Dubinsky, Marla C., Rotter, Jerome I., Barken, Derren M., Princen, Fred, Carroll, Susan, Brown, Michelle, Stachelski, Jordan, Chuang, Emil, Landers, Carol J., Stempak, Joanne M., Singh, Sharat, Silverberg, Mark S.
Published 2011

TNFRSF1B Is Associated with ANCA in IBD

by Li, Dalin, Silverberg, Mark S., Haritunians, Talin, Dubinsky, Marla C., Landers, Carol, Stempak, Joanne M., Milgrom, Raquel, Guo, Xiuqing, Ida Chen, Yii-Der, Rotter, Jerome I., Taylor, Kent D., McGovern, Dermot P. B., Targan, Stephan R.
Published in Inflamm Bowel Dis (2016)

Complex host genetics influence the microbiome in inflammatory bowel disease

by Knights, Dan, Silverberg, Mark S, Weersma, Rinse K, Gevers, Dirk, Dijkstra, Gerard, Huang, Hailiang, Tyler, Andrea D, van Sommeren, Suzanne, Imhann, Floris, Stempak, Joanne M, Huang, Hu, Vangay, Pajau, Al-Ghalith, Gabriel A, Russell, Caitlin, Sauk, Jenny, Knight, Jo, Daly, Mark J, Huttenhower, Curtis, Xavier, Ramnik J
Published in Genome Med (2014)

Granulocyte-Macrophage Colony-Stimulating Factor Auto-Antibodies: A Marker of Aggressive Crohn’s Disease

by Gathungu, Grace, Kim, Mi-Ok, Ferguson, John P., Sharma, Yashoda, Zhang, Wei, Ng, Sok Meng E., Bonkowski, Erin, Ning, Kaida, Simms, Lisa A., Croft, Anthony R., Stempak, Joanne M., Walker, Nicole, Huang, Ning, Xiao, Yang, Silverberg, Mark S., Trapnell, Bruce C., Cho, Judy H., Radford-Smith, Graham L., Denson, Lee A.
Published 2013

A pleiotropic missense variant in SLC39A8 is associated with Crohn’s disease and human gut microbiome composition

by Li, Dalin, Achkar, Jean-Paul, Haritunians, Talin, Jacobs, Jonathan P, Hui, Ken Y, D’Amato, Mauro, Brand, Stephan, Radford-Smith, Graham, Halfvarson, Jonas, Niess, Jan-Hendrik, Kugathasan, Subra, Büning, Carsten, Schumm, L Philip, Klei, Lambertus, Ananthakrishnan, Ashwin, Aumais, Guy, Baidoo, Leonard, Dubinsky, Marla, Fiocchi, Claudio, Glas, Jürgen, Milgrom, Raquel, Proctor, Deborah D, Regueiro, Miguel, Simms, Lisa A, Stempak, Joanne M, Targan, Stephan R., Törkvist, Leif, Sharma, Yashoda, Devlin, Bernie, Borneman, James, Hakonarson, Hakon, Xavier, Ramnik J, Daly, Mark, Brant, Steven R, Rioux, John D, Silverberg, Mark S, Cho, Judy H, Braun, Jonathan, McGovern, Dermot PB, Duerr, Richard H
Published in Gastroenterology (2016)

A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn’s Disease and Reduces Monocyte Signaling via GMCSF

by Chuang, Ling-Shiang, Villaverde, Nicole, Hui, Ken Y., Mortha, Arthur, Rahman, Adeeb, Levine, Adam P., Haritunians, Talin, Evelyn Ng, Sok Meng, Zhang, Wei, Hsu, Nai-Yun, Facey, Jody-Ann, Luong, Tramy, Fernandez-Hernandez, Heriberto, Li, Dalin, Rivas, Manuel, Schiff, Elena R., Gusev, Alexander, Schumm, L. Phillip, Bowen, Beatrice M., Sharma, Yashoda, Ning, Kaida, Remark, Romain, Gnjatic, Sacha, Legnani, Peter, George, James, Sands, Bruce E., Stempak, Joanne M., Datta, Lisa W., Lipka, Seth, Katz, Seymour, Cheifetz, Adam S., Barzilai, Nir, Pontikos, Nikolas, Abraham, Clara, Dubinsky, Marla J., Targan, Stephan, Taylor, Kent, Rotter, Jerome I, Scherl, Ellen J., Desnick, Robert J., Abreu, Maria T., Zhao, Hongyu, Atzmon, Gil, Pe’er, Itsik, Kugathasan, Subra, Hakonarson, Hakon, McCauley, Jacob L., Lencz, Todd, Darvasi, Ariel, Plagnol, Vincent, Silverberg, Mark S., Muise, Aleixo M., Brant, Steven R., Daly, Mark J., Segal, Anthony W., Duerr, Richard H., Merad, Miriam, McGovern, Dermot P.B., Peter, Inga, Cho, Judy H.
Published in Gastroenterology (2016)