Exploration of coding and non-coding variants in cancer using GenomePaint

by Zhou, Xin, Wang, Jian, Patel, Jaimin, Valentine, Marc, Shao, Ying, Newman, Scott, Sioson, Edgar, Tian, Liqing, Liu, Yu, Brady, Samuel W., Flasch, Diane, Ma, Xiaotu, Liu, Yanling, Paul, Robin, Edmonson, Michael N., Rusch, Michael C., Li, Chunliang, Baker, Suzanne J., Easton, John, Zhang, Jinghui
Published in Cancer Cell (2021)

Pan-cancer genome and transcriptome analyses of 1,699 pediatric leukemias and solid tumors

by Ma, Xiaotu, Liu, Yu, Liu, Yanling, Alexandrov, Ludmil B, Edmonson, Michael N., Gawad, Charles, Zhou, Xin, Li, Yongjin, Rusch, Michael C., Easton, John, Huether, Robert, Gonzalez-Pena, Veronica, Wilkinson, Mark R., Hermida, Leandro C., Davis, Sean, Sioson, Edgar, Pounds, Stanley, Cao, Xueyuan, Ries, Rhonda E., Wang, Zhaoming, Chen, Xiang, Dong, Li, Diskin, Sharon J., Smith, Malcolm A., Guidry Auvil, Jaime M., Meltzer, Paul S., Lau, Ching C., Perlman, Elizabeth J., Maris, John M., Meshinchi, Soheil, Hunger, Stephen P., Gerhard, Daniela S., Zhang, Jinghui
Published in Nature (2018)

THE GENOMIC LANDSCAPE OF PEDIATRIC AND YOUNG ADULT T-LINEAGE ACUTE LYMPHOBLASTIC LEUKEMIA

by Liu, Yu, Easton, John, Shao, Ying, Maciaszek, Jamie, Wang, Zhaoming, Wilkinson, Mark R., McCastlain, Kelly, Edmonson, Michael, Pounds, Stanley B., Shi, Lei, Zhou, Xin, Ma, Xiaotu, Sioson, Edgar, Li, Yongjin, Rusch, Michael, Gupta, Pankaj, Pei, Deqing, Cheng, Cheng, Smith, Malcolm A., Auvil, Jaime Guidry, Gerhard, Daniela S., Relling, Mary V., Winick, Naomi J., Carroll, Andrew J., Heerema, Nyla A., Raetz, Elizabeth, Devidas, Meenakshi, Willman, Cheryl L., Harvey, Richard C., Carroll, William L., Dunsmore, Kimberly P., Winter, Stuart S., Wood, Brent L, Sorrentino, Brian P., Downing, James R., Loh, Mignon L., Hunger, Stephen P, Zhang, Jinghui, Mullighan, Charles G.
Published in Nat Genet (2017)

Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia

by Li, Benshang, Brady, Samuel W., Ma, Xiaotu, Shen, Shuhong, Zhang, Yingchi, Li, Yongjin, Szlachta, Karol, Dong, Li, Liu, Yu, Yang, Fan, Wang, Ningling, Flasch, Diane A., Myers, Matthew A., Mulder, Heather L., Ding, Lixia, Liu, Yanling, Tian, Liqing, Hagiwara, Kohei, Xu, Ke, Zhou, Xin, Sioson, Edgar, Wang, Tianyi, Yang, Liu, Zhao, Jie, Zhang, Hui, Shao, Ying, Sun, Hongye, Sun, Lele, Cai, Jiaoyang, Sun, Hui-Ying, Lin, Ting-Nien, Du, Lijuan, Li, Hui, Rusch, Michael, Edmonson, Michael N., Easton, John, Zhu, Xiaofan, Zhang, Jingliao, Cheng, Cheng, Raphael, Benjamin J., Tang, Jingyan, Downing, James R., Alexandrov, Ludmil B., Zhou, Bin-Bing S., Pui, Ching-Hon, Yang, Jun J., Zhang, Jinghui
Published in Blood (2020)

Genomic Subtyping and Therapeutic Targeting of Acute Erythroleukemia

by Iacobucci, Ilaria, Wen, Ji, Meggendorfer, Manja, Choi, John K., Shi, Lei, Pounds, Stanley B., Carmichael, Catherine L., Masih, Katherine E., Morris, Sarah M., Lindsley, R. Coleman, Janke, Laura J., Alexander, Thomas B., Song, Guangchun, Qu, Chunxu, Li, Yongjin, Payne-Turner, Debbie, Tomizawa, Daisuke, Kiyokawa, Nobutaka, Valentine, Marcus, Valentine, Virginia, Basso, Giuseppe, Locatelli, Franco, Enemark, Eric J., Kham, Shirley K. Y., Yeoh, Allen E. J., Ma, Xiaotu, Zhou, Xin, Sioson, Edgar, Rusch, Michael, Ries, Rhonda E., Stieglitz, Elliot, Hunger, Stephen P., Wei, Andrew H., To, L Bik, Lewis, Ian D., D’Andrea, Richard J., Kile, Benjamin T., Brown, Anna L., Scott, Hamish S., Hahn, Christopher N., Marlton, Paula, Pei, Deqing, Cheng, Cheng, Loh, Mignon L., Ebert, Benjamin L., Meshinchi, Soheil, Haferlach, Torsten, Mullighan, Charles G.
Published in Nat Genet (2019)

St. Jude Cloud—a Pediatric Cancer Genomic Data Sharing Ecosystem

by McLeod, Clay, Gout, Alexander M., Zhou, Xin, Thrasher, Andrew, Rahbarinia, Delaram, Brady, Samuel W., Macias, Michael, Birch, Kirby, Finkelstein, David, Sunny, Jobin, Mudunuri, Rahul, Orr, Brent A., Treadway, Madison, Davidson, Bob, Ard, Tracy K., Chiao, Arthur, Swistak, Andrew, Wiggins, Stephanie, Foy, Scott, Wang, Jian, Sioson, Edgar, Wang, Shuoguo, Michael, J. Robert, Liu, Yu, Ma, Xiaotu, Patel, Aman, Edmonson, Michael N., Wilkinson, Mark R., Frantz, Andrew M., Chang, Ti-Cheng, Tian, Liqing, Lei, Shaohua, Islam, S. M. Ashiqul, Meyer, Christopher, Thangaraj, Naina, Tater, Pamella, Kandali, Vijay, Ma, Singer, Nguyen, Tuan, Serang, Omar, McGuire, Irina, Robison, Nedra, Gentry, Darrell, Tang, Xing, Palmer, Lance E., Wu, Gang, Suh, Ed, Tanner, Leigh, McMurry, James, Lear, Matthew, Pappo, Alberto S., Wang, Zhaoming, Wilson, Carmen L., Cheng, Yong, Meshinchi, Soheil, Alexandrov, Ludmil B., Weiss, Mitchell J., Armstrong, Gregory T., Robison, Leslie L., Yasui, Yutaka, Nichols, Kim E., Ellison, David W., Bangur, Chaitanya, Mullighan, Charles G., Baker, Suzanne J., Dyer, Michael A., Miller, Geralyn, Newman, Scott, Rusch, Michael, Daly, Richard, Perry, Keith, Downing, James R., Zhang, Jinghui
Published in Cancer Discov (2021)