tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data

Por Selitsky, Sara R., Sethupathy, Praveen
Publicado no BMC Bioinformatics (2015)

Differential hepatitis C virus RNA target site selection and host factor activities of naturally occurring miR-122 3΄ variants

Por Yamane, Daisuke, Selitsky, Sara R., Shimakami, Tetsuro, Li, You, Zhou, Mi, Honda, Masao, Sethupathy, Praveen, Lemon, Stanley M.
Publicado no Nucleic Acids Res (2017)

microRNA-122 Abundance in Hepatocellular Carcinoma and Non-Tumor Liver Tissue from Japanese Patients with Persistent HCV versus HBV Infection

Por Spaniel, Carolyn, Honda, Masao, Selitsky, Sara R., Yamane, Daisuke, Shimakami, Tetsuro, Kaneko, Shuichi, Lanford, Robert E., Lemon, Stanley M.
Publicado em 2013

A Gene Expression Panel is Accurate for Diagnosis and Monitoring Treatment of Eosinophilic Esophagitis in Adults

Por Dellon, Evan S, Veerappan, Ranjitha, Selitsky, Sara R, Parker, Joel S, Higgins, Leana L, Beitia, RoseMary, Genta, Robert M, Lash, Richard H
Publicado no Clin Transl Gastroenterol (2017)

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer

Por Mose, Lisle E., Selitsky, Sara R., Bixby, Lisa M., Marron, David L., Iglesia, Michael D., Serody, Jonathan S., Perou, Charles M., Vincent, Benjamin G., Parker, Joel S.
Publicado no Bioinformatics (2016)

A Novel Intronic Single Nucleotide Polymorphism in the Myosin heavy polypeptide 4 Gene Is Responsible for the Mini-Muscle Phenotype Characterized by Major Reduction in Hind-Limb Mu...

Por Kelly, Scott A., Bell, Timothy A., Selitsky, Sara R., Buus, Ryan J., Hua, Kunjie, Weinstock, George M., Garland, Theodore, Pardo-Manuel de Villena, Fernando, Pomp, Daniel
Publicado em 2013

Transcriptomic Analysis of Chronic Hepatitis B and C and Liver Cancer Reveals MicroRNA-Mediated Control of Cholesterol Synthesis Programs

Por Selitsky, Sara R., Dinh, Timothy A., Toth, Cynthia L., Kurtz, C. Lisa, Honda, Masao, Struck, Benjamin R., Kaneko, Shuichi, Vickers, Kasey C., Lemon, Stanley M., Sethupathy, Praveen
Publicado no mBio (2015)

Claudin-low bladder tumors are immune infiltrated and actively immune suppressed

Por Kardos, Jordan, Chai, Shengjie, Mose, Lisle E., Selitsky, Sara R., Krishnan, Bhavani, Saito, Ryoichi, Iglesia, Michael D., Milowsky, Matthew I., Parker, Joel S., Kim, William Y., Vincent, Benjamin G.
Publicado no JCI Insight (2016)

Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C

Por Selitsky, Sara R., Baran-Gale, Jeanette, Honda, Masao, Yamane, Daisuke, Masaki, Takahiro, Fannin, Emily E., Guerra, Bernadette, Shirasaki, Takayoshi, Shimakami, Tetsuro, Kaneko, Shuichi, Lanford, Robert E., Lemon, Stanley M., Sethupathy, Praveen
Publicado no Sci Rep (2015)

Model of fibrolamellar hepatocellular carcinomas reveals striking enrichment in cancer stem cells

Por Oikawa, Tsunekazu, Wauthier, Eliane, Dinh, Timothy A., Selitsky, Sara R., Reyna-Neyra, Andrea, Carpino, Guido, Levine, Ronald, Cardinale, Vincenzo, Klimstra, David, Gaudio, Eugenio, Alvaro, Domenico, Carrasco, Nancy, Sethupathy, Praveen, Reid, Lola M.
Publicado no Nat Commun (2015)

Prospective assessment of serum periostin as a biomarker for diagnosis and monitoring of eosinophilic esophagitis

Por Dellon, Evan S., Higgins, Leana L., Beitia, RoseMary, Rusin, Spencer, Woosley, John T., Veerappan, Ranjitha, Selitsky, Sara R., Parker, Joel S., Genta, Robert M., Lash, Richard H., Aranda, Richard, Peach, Robert J., Grimm, Michael
Publicado no Aliment Pharmacol Ther (2016)

Identification of Driver Genes in Hepatocellular Carcinoma by Exome Sequencing

Por Cleary, Sean P., Jeck, William R., Zhao, Xiaobei, Chen, Kui, Selitsky, Sara R., Savich, Gleb L., Tan, Ting-Xu, Wu, Michael C., Getz, Gad, Lawrence, Michael S., Parker, Joel S., Li, Jinyu, Powers, Scott, Kim, Hyeja, Fischer, Sandra, Guindi, Maha, Ghanekar, Anand, Chiang, Derek Y.
Publicado em 2013

Combating subclonal evolution of resistant cancer phenotypes

Por Brady, Samuel W., McQuerry, Jasmine A., Qiao, Yi, Piccolo, Stephen R., Shrestha, Gajendra, Jenkins, David F., Layer, Ryan M., Pedersen, Brent S., Miller, Ryan H., Esch, Amanda, Selitsky, Sara R., Parker, Joel S., Anderson, Layla A., Dalley, Brian K., Factor, Rachel E., Reddy, Chakravarthy B., Boltax, Jonathan P., Li, Dean Y., Moos, Philip J., Gray, Joe W., Heiser, Laura M., Buys, Saundra S., Cohen, Adam L., Johnson, W. Evan, Quinlan, Aaron R., Marth, Gabor, Werner, Theresa L., Bild, Andrea H.
Publicado no Nat Commun (2017)