Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes

por Pedersen, Brent S., De, Subhajyoti
Publicado 2013

Who’s Who? Detecting and Resolving Sample Anomalies in Human DNA Sequencing Studies with Peddy

por Pedersen, Brent S., Quinlan, Aaron R.
Publicado en Am J Hum Genet (2017)

cyvcf2: fast, flexible variant analysis with Python

por Pedersen, Brent S, Quinlan, Aaron R
Publicado en Bioinformatics (2017)

Mosdepth: quick coverage calculation for genomes and exomes

por Pedersen, Brent S, Quinlan, Aaron R
Publicado en Bioinformatics (2018)

Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls

por Pedersen, Brent S, Quinlan, Aaron R
Publicado en Gigascience (2019)

hts-nim: scripting high-performance genomic analyses

por Pedersen, Brent S, Quinlan, Aaron R
Publicado en Bioinformatics (2018)

The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment

por De, Subhajyoti, Pedersen, Brent S., Kechris, Katerina
Publicado en Brief Bioinform (2014)

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

por Thomas, Brian C., Pedersen, Brent, Freeling, Michael
Publicado 2006

Transposed Genes in Arabidopsis Are Often Associated with Flanking Repeats

por Woodhouse, Margaret R., Pedersen, Brent, Freeling, Michael
Publicado 2010

CruzDB: software for annotation of genomic intervals with UCSC genome-browser database

por Pedersen, Brent S., Yang, Ivana V., De, Subhajyoti
Publicado 2013

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

por Dale, Ryan K., Pedersen, Brent S., Quinlan, Aaron R.
Publicado 2011

Vcfanno: fast, flexible annotation of genetic variants

por Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.
Publicado en Genome Biol (2016)

Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention Through Multiple Tetraploidies in the Grasses

por Schnable, James C., Pedersen, Brent S., Subramaniam, Sabarinath, Freeling, Michael
Publicado 2011

Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses

por Turco, Gina, Schnable, James C., Pedersen, Brent, Freeling, Michael
Publicado 2013

MethylCoder: software pipeline for bisulfite-treated sequences

por Pedersen, Brent, Hsieh, Tzung-Fu, Ibarra, Christian, Fischer, Robert L.
Publicado 2011

Copy neutral loss of heterozygosity is more frequent in older ovarian cancer patients

por Pedersen, Brent, Konstantinopoulos, Panagiotis A., Spillman, Monique A., De, Subhajyoti
Publicado 2013

Arabidopsis intragenomic conserved noncoding sequence

por Thomas, Brian C., Rapaka, Lakshmi, Lyons, Eric, Pedersen, Brent, Freeling, Michael
Publicado 2007

G-Boxes, Bigfoot Genes, and Environmental Response: Characterization of Intragenomic Conserved Noncoding Sequences in Arabidopsis

por Freeling, Michael, Rapaka, Lakshmi, Lyons, Eric, Pedersen, Brent, Thomas, Brian C.
Publicado 2007

Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values

por Pedersen, Brent S., Schwartz, David A., Yang, Ivana V., Kechris, Katerina J.
Publicado 2012

In Utero Cigarette Smoke Affects Allergic Airway Disease But Does Not Alter the Lung Methylome

por Eyring, Kenneth R., Pedersen, Brent S., Yang, Ivana V., Schwartz, David A.
Publicado en PLoS One (2015)