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MethylCoder: software pipeline for bisulfite-treated sequences

Motivation: MethylCoder is a software program that generates per-base methylation data given a set of bisulfite-treated reads. It provides the option to use either of two existing short-read aligners, each with different strengths. It accounts for soft-masked alignments and overlapping paired-end re...

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Bibliographic Details
Main Authors: Pedersen, Brent, Hsieh, Tzung-Fu, Ibarra, Christian, Fischer, Robert L.
Format: Artigo
Language:Inglês
Published: Oxford University Press 2011
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC3157921/
https://ncbi.nlm.nih.gov/pubmed/21724594
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btr394
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