R classes and methods for SNP array data

Por Scharpf, Robert B., Ruczinski, Ingo
Publicado em 2010

Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays

Por Scharpf, Robert B., Parmigiani, Giovanni, Pevsner, Jonathan, Ruczinski, Ingo
Publicado em 2008

Likelihood Estimation of Conjugacy Relationships in Linear Models with Applications to High-Throughput Genomics

Por Caffo, Brian S, Liu, Dongmei, Scharpf, Robert B., Parmigiani, Giovanni
Publicado em 2009

A Bayesian model for cross-study differential gene expression

Por Scharpf, Robert B., Tjelmeland, Håkon, Parmigiani, Giovanni, Nobel, Andrew B.
Publicado em 2009

Rejoinder

Por Scharpf, Robert B., Tjelmeland, Håkon, Parmigiani, Giovanni, Nobel, Andrew B.
Publicado em 2009

Using the R Package crlmm for Genotyping and Copy Number Estimation

Por Scharpf, Robert B., Irizarry, Rafael A., Ritchie, Matthew E., Carvalho, Benilton, Ruczinski, Ingo
Publicado em 2011

A multilevel model to address batch effects in copy number estimation using SNP arrays

Por Scharpf, Robert B., Ruczinski, Ingo, Carvalho, Benilton, Doan, Betty, Chakravarti, Aravinda, Irizarry, Rafael A.
Publicado em 2011

Characterization of the Genomic Architecture and Mutational Spectrum of a Small Cell Prostate Carcinoma

Por Scott, Alan F., Mohr, David W., Ling, Hua, Scharpf, Robert B., Zhang, Peng, Liptak, Gregory S.
Publicado em 2014

Fast detection of de novo copy number variants from SNP arrays for case-parent trios

Por Scharpf, Robert B, Beaty, Terri H, Schwender, Holger, Younkin, Samuel G, Scott, Alan F, Ruczinski, Ingo
Publicado em 2012

Pre-processing Agilent microarray data

Por Zahurak, Marianna, Parmigiani, Giovanni, Yu, Wayne, Scharpf, Robert B, Berman, David, Schaeffer, Edward, Shabbeer, Shabana, Cope, Leslie
Publicado em 2007

Cross-platform Comparison of Two Pancreatic Cancer Phenotypes

Por Scharpf, Robert B., Iacobuzio-Donahue, Christine A., Cope, Leslie, Ruczinski, Ingo, Garrett-Mayer, Elizabeth, Lakkur, Sindhu, Campagna, Domenico, Parmigiani, Giovanni
Publicado em 2010

Tackling the widespread and critical impact of batch effects in high-throughput data

Por Leek, Jeffrey T., Scharpf, Robert B., Bravo, Héctor Corrada, Simcha, David, Langmead, Benjamin, Johnson, W. Evan, Geman, Donald, Baggerly, Keith, Irizarry, Rafael A.
Publicado em 2010

A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk

Por Younkin, Samuel G, Scharpf, Robert B, Schwender, Holger, Parker, Margaret M, Scott, Alan F, Marazita, Mary L, Beaty, Terri H, Ruczinski, Ingo
Publicado em 2014

Dectecting disease variants in case-parent trio studies using the Bioconductor software package trio

Por Schwender, Holger, Li, Qing, Neumann, Christoph, Taub, Margaret A., Younkin, Samuel G., Berger, Philipp, Scharpf, Robert B., Beaty, Terri H., Ruczinski, Ingo
Publicado em 2014

A genome-wide study of inherited deletions identified two regions associated with non-syndromic isolated oral clefts

Por Younkin, Samuel G, Scharpf, Robert B, Schwender, Holger, Parker, Margaret M, Scott, Alan F, Marazita, Mary L, Beaty, Terri H, Ruczinski, Ingo
Publicado no Birth Defects Res A Clin Mol Teratol (2015)

Genome-Wide Association of Copy Number Polymorphisms and Kidney Function

Por Li, Man, Carey, Jacob, Cristiano, Stephen, Susztak, Katalin, Coresh, Josef, Boerwinkle, Eric, Kao, Wen Hong L., Beaty, Terri H., Köttgen, Anna, Scharpf, Robert B.
Publicado no PLoS One (2017)

Regulation of platelet granule exocytosis by S-nitrosylation

Por Morrell, Craig N., Matsushita, Kenji, Chiles, Kelly, Scharpf, Robert B., Yamakuchi, Munekazu, Mason, Rebecca J. A., Bergmeier, Wolfgang, Mankowski, Joseph L., Baldwin, William M., Faraday, Nauder, Lowenstein, Charles J.
Publicado em 2005

Hemizygous Deletion on Chromosome 3p26.1 Is Associated with Heavy Smoking among African American Subjects in the COPDGene Study

Por Begum, Ferdouse, Ruczinski, Ingo, Hokanson, John E., Lutz, Sharon M., Parker, Margaret M., Cho, Michael H., Hetmanski, Jacqueline B., Scharpf, Robert B., Crapo, James D., Silverman, Edwin K., Beaty, Terri H.
Publicado no PLoS One (2016)

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations

Por Scharpf, Robert B, Mireles, Lynn, Yang, Qiong, Köttgen, Anna, Ruczinski, Ingo, Susztak, Katalin, Halper-Stromberg, Eitan, Tin, Adrienne, Cristiano, Stephen, Chakravarti, Aravinda, Boerwinkle, Eric, Fox11, Caroline S, Coresh, Josef, Linda Kao, Wen Hong
Publicado em 2014

Performance assessment of copy number microarray platforms using a spike-in experiment

Por Halper-Stromberg, Eitan, Frelin, Laurence, Ruczinski, Ingo, Scharpf, Robert, Jie, Chunfa, Carvalho, Benilton, Hao, Haiping, Hetrick, Kurt, Jedlicka, Anne, Dziedzic, Amanda, Doheny, Kim, Scott, Alan F., Baylin, Steve, Pevsner, Jonathan, Spencer, Forrest, Irizarry, Rafael A.
Publicado em 2011