The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission

di Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith
Pubblicato in PLoS One (2017)

Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method

di Brown, Julianne R., Roy, Sunando, Ruis, Christopher, Yara Romero, Erika, Shah, Divya, Williams, Rachel, Breuer, Judy
Pubblicato in J Clin Microbiol (2016)

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

di Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Pubblicato in Nat Microbiol (2020)

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

di Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Pubblicato in Nat Microbiol (2021)

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence

di Ruis, Christopher, Lindesmith, Lisa C, Mallory, Michael L, Brewer-Jensen, Paul D, Bryant, Josephine M, Costantini, Veronica, Monit, Christopher, Vinjé, Jan, Baric, Ralph S, Goldstein, Richard A, Breuer, Judith
Pubblicato in Virus Evol (2020)

Positive selection in dNTPase SAMHD1 throughout mammalian evolution

di Monit, Christopher, Morris, Elizabeth R., Ruis, Christopher, Szafran, Bart, Thiltgen, Grant, Tsai, Ming-Han Chloe, Mitchison, N. Avrion, Bishop, Kate N., Stoye, Jonathan P., Taylor, Ian A., Fassati, Ariberto, Goldstein, Richard A.
Pubblicato in Proc Natl Acad Sci U S A (2019)

Producing polished prokaryotic pangenomes with the Panaroo pipeline

di Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Pubblicato in Genome Biol (2020)

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

di Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
Pubblicato in Acta Neuropathol (2016)

A comprehensive characterization of chronic norovirus infection in immunodeficient hosts

di Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.
Pubblicato in J Allergy Clin Immunol (2019)

Stepwise pathogenic evolution of Mycobacterium abscessus

di Bryant, Josephine M, Brown, Karen P, Burbaud, Sophie, Everall, Isobel, Belardinelli, Juan M, Rodriguez-Rincon, Daniela, Grogono, Dorothy M, Peterson, Chelsea M., Verma, Deepshikha, Evans, Ieuan E., Ruis, Christopher, Weimann, Aaron, Arora, Divya, Malhotra, Sony, Bannerman, Bridget, Passemar, Charlotte, Templeton, Kerra, MacGregor, Gordon, Jiwa, Kasim, Fisher, Andrew J, Blundell, Tom L, Ordway, Diane J, Jackson, Mary, Parkhill, Julian, Floto, R. Andres
Pubblicato in Science (2021)

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

di du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.
Pubblicato in Science (2021)