The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission

מאת Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith
הוצא לאור ב PLoS One (2017)

Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method

מאת Brown, Julianne R., Roy, Sunando, Ruis, Christopher, Yara Romero, Erika, Shah, Divya, Williams, Rachel, Breuer, Judy
הוצא לאור ב J Clin Microbiol (2016)

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

מאת Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
הוצא לאור ב Nat Microbiol (2020)

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

מאת Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
הוצא לאור ב Nat Microbiol (2021)

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence

מאת Ruis, Christopher, Lindesmith, Lisa C, Mallory, Michael L, Brewer-Jensen, Paul D, Bryant, Josephine M, Costantini, Veronica, Monit, Christopher, Vinjé, Jan, Baric, Ralph S, Goldstein, Richard A, Breuer, Judith
הוצא לאור ב Virus Evol (2020)

Positive selection in dNTPase SAMHD1 throughout mammalian evolution

מאת Monit, Christopher, Morris, Elizabeth R., Ruis, Christopher, Szafran, Bart, Thiltgen, Grant, Tsai, Ming-Han Chloe, Mitchison, N. Avrion, Bishop, Kate N., Stoye, Jonathan P., Taylor, Ian A., Fassati, Ariberto, Goldstein, Richard A.
הוצא לאור ב Proc Natl Acad Sci U S A (2019)

Producing polished prokaryotic pangenomes with the Panaroo pipeline

מאת Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
הוצא לאור ב Genome Biol (2020)

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

מאת Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
הוצא לאור ב Acta Neuropathol (2016)

A comprehensive characterization of chronic norovirus infection in immunodeficient hosts

מאת Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.
הוצא לאור ב J Allergy Clin Immunol (2019)

Stepwise pathogenic evolution of Mycobacterium abscessus

מאת Bryant, Josephine M, Brown, Karen P, Burbaud, Sophie, Everall, Isobel, Belardinelli, Juan M, Rodriguez-Rincon, Daniela, Grogono, Dorothy M, Peterson, Chelsea M., Verma, Deepshikha, Evans, Ieuan E., Ruis, Christopher, Weimann, Aaron, Arora, Divya, Malhotra, Sony, Bannerman, Bridget, Passemar, Charlotte, Templeton, Kerra, MacGregor, Gordon, Jiwa, Kasim, Fisher, Andrew J, Blundell, Tom L, Ordway, Diane J, Jackson, Mary, Parkhill, Julian, Floto, R. Andres
הוצא לאור ב Science (2021)

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

מאת du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.
הוצא לאור ב Science (2021)