The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission

door Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith
Gepubliceerd in PLoS One (2017)

Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method

door Brown, Julianne R., Roy, Sunando, Ruis, Christopher, Yara Romero, Erika, Shah, Divya, Williams, Rachel, Breuer, Judy
Gepubliceerd in J Clin Microbiol (2016)

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

door Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Gepubliceerd in Nat Microbiol (2020)

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

door Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Gepubliceerd in Nat Microbiol (2021)

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence

door Ruis, Christopher, Lindesmith, Lisa C, Mallory, Michael L, Brewer-Jensen, Paul D, Bryant, Josephine M, Costantini, Veronica, Monit, Christopher, Vinjé, Jan, Baric, Ralph S, Goldstein, Richard A, Breuer, Judith
Gepubliceerd in Virus Evol (2020)

Positive selection in dNTPase SAMHD1 throughout mammalian evolution

door Monit, Christopher, Morris, Elizabeth R., Ruis, Christopher, Szafran, Bart, Thiltgen, Grant, Tsai, Ming-Han Chloe, Mitchison, N. Avrion, Bishop, Kate N., Stoye, Jonathan P., Taylor, Ian A., Fassati, Ariberto, Goldstein, Richard A.
Gepubliceerd in Proc Natl Acad Sci U S A (2019)

Producing polished prokaryotic pangenomes with the Panaroo pipeline

door Tonkin-Hill, Gerry, MacAlasdair, Neil, Ruis, Christopher, Weimann, Aaron, Horesh, Gal, Lees, John A., Gladstone, Rebecca A., Lo, Stephanie, Beaudoin, Christopher, Floto, R. Andres, Frost, Simon D.W., Corander, Jukka, Bentley, Stephen D., Parkhill, Julian
Gepubliceerd in Genome Biol (2020)

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

door Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
Gepubliceerd in Acta Neuropathol (2016)

A comprehensive characterization of chronic norovirus infection in immunodeficient hosts

door Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.
Gepubliceerd in J Allergy Clin Immunol (2019)

Stepwise pathogenic evolution of Mycobacterium abscessus

door Bryant, Josephine M, Brown, Karen P, Burbaud, Sophie, Everall, Isobel, Belardinelli, Juan M, Rodriguez-Rincon, Daniela, Grogono, Dorothy M, Peterson, Chelsea M., Verma, Deepshikha, Evans, Ieuan E., Ruis, Christopher, Weimann, Aaron, Arora, Divya, Malhotra, Sony, Bannerman, Bridget, Passemar, Charlotte, Templeton, Kerra, MacGregor, Gordon, Jiwa, Kasim, Fisher, Andrew J, Blundell, Tom L, Ordway, Diane J, Jackson, Mary, Parkhill, Julian, Floto, R. Andres
Gepubliceerd in Science (2021)

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

door du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.
Gepubliceerd in Science (2021)