Measurements of Intrahost Viral Diversity Are Extremely Sensitive to Systematic Errors in Variant Calling

Yazar: McCrone, John T., Lauring, Adam S.
Yayımlandı J Virol (2016)

Genetic bottlenecks in intraspecies virus transmission

Yazar: McCrone, John T., Lauring, Adam S.
Yayımlandı Curr Opin Virol (2017)

The Mutational Robustness of Influenza A Virus

Yazar: Visher, Elisa, Whitefield, Shawn E., McCrone, John T., Fitzsimmons, William, Lauring, Adam S.
Yayımlandı PLoS Pathog (2016)

Stochastic processes constrain the within and between host evolution of influenza virus

Yazar: McCrone, John T, Woods, Robert J, Martin, Emily T, Malosh, Ryan E, Monto, Arnold S, Lauring, Adam S
Yayımlandı eLife (2018)

Influenza B Viruses Exhibit Lower Within-Host Diversity than Influenza A Viruses in Human Hosts

Yazar: Valesano, Andrew L., Fitzsimmons, William J., McCrone, John T., Petrie, Joshua G., Monto, Arnold S., Martin, Emily T., Lauring, Adam S.
Yayımlandı J Virol (2020)

Effect of diet on the survival and phenotype of a mouse model for spinal muscular atrophy

Yazar: Butchbach, Matthew E. R., Rose, Ferrill F., Rhoades, Sarah, Marston, John, McCrone, John T., Sinnott, Rachel, Lorson, Christian L.
Baskı/Yayın Bilgisi 2009

Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses

Yazar: Debbink, Kari, McCrone, John T., Petrie, Joshua G., Truscon, Rachel, Johnson, Emileigh, Mantlo, Emily K., Monto, Arnold S., Lauring, Adam S.
Yayımlandı PLoS Pathog (2017)

A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

Yazar: Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Yayımlandı Nat Microbiol (2020)

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology

Yazar: Rambaut, Andrew, Holmes, Edward C., O’Toole, Áine, Hill, Verity, McCrone, John T., Ruis, Christopher, du Plessis, Louis, Pybus, Oliver G.
Yayımlandı Nat Microbiol (2021)

A speed–fidelity trade-off determines the mutation rate and virulence of an RNA virus

Yazar: Fitzsimmons, William J., Woods, Robert J., McCrone, John T., Woodman, Andrew, Arnold, Jamie J., Yennawar, Madhumita, Evans, Richard, Cameron, Craig E., Lauring, Adam S.
Yayımlandı PLoS Biol (2018)

Computational and Empirical Studies Predict Mycobacterium tuberculosis-Specific T Cells as a Biomarker for Infection Outcome

Yazar: Marino, Simeone, Gideon, Hannah P., Gong, Chang, Mankad, Shawn, McCrone, John T., Lin, Philana Ling, Linderman, Jennifer J., Flynn, JoAnne L., Kirschner, Denise E.
Yayımlandı PLoS Comput Biol (2016)

Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study.

Yazar: Lemey, Philippe, Hong, Samuel, Hill, Verity, Baele, Guy, Poletto, Chiara, Colizza, Vittoria, O’Toole, Áine, McCrone, John T., Andersen, Kristian G., Worobey, Michael, Nelson, Martha I., Rambaut, Andrew, Suchard, Marc A.
Yayımlandı bioRxiv (2020)

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Yazar: Lemey, Philippe, Hong, Samuel L., Hill, Verity, Baele, Guy, Poletto, Chiara, Colizza, Vittoria, O’Toole, Áine, McCrone, John T., Andersen, Kristian G., Worobey, Michael, Nelson, Martha I., Rambaut, Andrew, Suchard, Marc A.
Yayımlandı Nat Commun (2020)

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

Yazar: du Plessis, Louis, McCrone, John T., Zarebski, Alexander E., Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R., Faria, Nuno R., Jackson, Ben, Loman, Nicholas J., O’Toole, Áine, Nicholls, Samuel M., Parag, Kris V., Scher, Emily, Vasylyeva, Tetyana I., Volz, Erik M., Watts, Alexander, Bogoch, Isaac I., Khan, Kamran, Aanensen, David M., Kraemer, Moritz U. G., Rambaut, Andrew, Pybus, Oliver G.
Yayımlandı Science (2021)

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

Yazar: Volz, Erik, Hill, Verity, McCrone, John T., Price, Anna, Jorgensen, David, O’Toole, Áine, Southgate, Joel, Johnson, Robert, Jackson, Ben, Nascimento, Fabricia F., Rey, Sara M., Nicholls, Samuel M., Colquhoun, Rachel M., da Silva Filipe, Ana, Shepherd, James, Pascall, David J., Shah, Rajiv, Jesudason, Natasha, Li, Kathy, Jarrett, Ruth, Pacchiarini, Nicole, Bull, Matthew, Geidelberg, Lily, Siveroni, Igor, Goodfellow, Ian, Loman, Nicholas J., Pybus, Oliver G., Robertson, David L., Thomson, Emma C., Rambaut, Andrew, Connor, Thomas R.
Yayımlandı Cell (2021)

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

Yazar: Lu, Jing, du Plessis, Louis, Liu, Zhe, Hill, Verity, Kang, Min, Lin, Huifang, Sun, Jiufeng, François, Sarah, Kraemer, Moritz U.G., Faria, Nuno R., McCrone, John T., Peng, Jinju, Xiong, Qianling, Yuan, Runyu, Zeng, Lilian, Zhou, Pingping, Liang, Chumin, Yi, Lina, Liu, Jun, Xiao, Jianpeng, Hu, Jianxiong, Liu, Tao, Ma, Wenjun, Li, Wei, Su, Juan, Zheng, Huanying, Peng, Bo, Fang, Shisong, Su, Wenzhe, Li, Kuibiao, Sun, Ruilin, Bai, Ru, Tang, Xi, Liang, Minfeng, Quick, Josh, Song, Tie, Rambaut, Andrew, Loman, Nick, Raghwani, Jayna, Pybus, Oliver G., Ke, Changwen
Yayımlandı Cell (2020)

Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador

Yazar: Gutierrez, Bernardo, Márquez, Sully, Prado-Vivar, Belén, Becerra-Wong, Mónica, Guadalupe, Juan José, da Silva Candido, Darlan, Fernandez-Cadena, Juan Carlos, Morey-Leon, Gabriel, Armas-Gonzalez, Rubén, Andrade-Molina, Derly Madeleiny, Bruno, Alfredo, de Mora, Domenica, Olmedo, Maritza, Portugal, Denisse, Gonzalez, Manuel, Orlando, Alberto, Drexler, Jan Felix, Moreira-Soto, Andres, Sander, Anna-Lena, Brünink, Sebastian, Kühne, Arne, Patiño, Leandro, Carrazco-Montalvo, Andrés, Mestanza, Orson, Zurita, Jeannete, Sevillano, Gabriela, du Plessis, Louis, McCrone, John T., Coloma, Josefina, Trueba, Gabriel, Barragán, Verónica, Rojas-Silva, Patricio, Grunauer, Michelle, Kraemer, Moritz U.G., Faria, Nuno R., Escalera-Zamudio, Marina, Pybus, Oliver G., Cárdenas, Paúl
Yayımlandı medRxiv (2021)

Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador

Yazar: Gutierrez, Bernardo, Márquez, Sully, Prado-Vivar, Belén, Becerra-Wong, Mónica, Guadalupe, Juan José, Candido, Darlan Da Silva, Fernandez-Cadena, Juan Carlos, Morey-Leon, Gabriel, Armas-Gonzalez, Rubén, Andrade-Molina, Derly Madeleiny, Bruno, Alfredo, De Mora, Domenica, Olmedo, Maritza, Portugal, Denisse, Gonzalez, Manuel, Orlando, Alberto, Drexler, Jan Felix, Moreira-Soto, Andres, Sander, Anna-Lena, Brünink, Sebastian, Kühne, Arne, Patiño, Leandro, Carrazco-Montalvo, Andrés, Mestanza, Orson, Zurita, Jeannete, Sevillano, Gabriela, Du Plessis, Louis, McCrone, John T, Coloma, Josefina, Trueba, Gabriel, Barragán, Verónica, Rojas-Silva, Patricio, Grunauer, Michelle, Kraemer, Moritz U G, Faria, Nuno R, Escalera-Zamudio, Marina, Pybus, Oliver G, Cárdenas, Paúl
Yayımlandı Virus Evol (2021)

Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

Yazar: da Silva Filipe, Ana, Shepherd, James G., Williams, Thomas, Hughes, Joseph, Aranday-Cortes, Elihu, Asamaphan, Patawee, Ashraf, Shirin, Balcazar, Carlos, Brunker, Kirstyn, Campbell, Alasdair, Carmichael, Stephen, Davis, Chris, Dewar, Rebecca, Gallagher, Michael D., Gunson, Rory, Hill, Verity, Ho, Antonia, Jackson, Ben, James, Edward, Jesudason, Natasha, Johnson, Natasha, McWilliam Leitch, E. Carol, Li, Kathy, MacLean, Alasdair, Mair, Daniel, McAllister, David A., McCrone, John T., McDonald, Sarah E., McHugh, Martin P., Morris, A. Keith, Nichols, Jenna, Niebel, Marc, Nomikou, Kyriaki, Orton, Richard J., O’Toole, Áine, Palmarini, Massimo, Parcell, Benjamin J., Parr, Yasmin A., Rambaut, Andrew, Rooke, Stefan, Shaaban, Sharif, Shah, Rajiv, Singer, Joshua B., Smollett, Katherine, Starinskij, Igor, Tong, Lily, Sreenu, Vattipally B., Wastnedge, Elizabeth, Holden, Matthew T. G., Robertson, David L., Templeton, Kate, Thomson, Emma C.
Yayımlandı Nat Microbiol (2021)

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland

Yazar: da Silva Filipe, Ana, Shepherd, James G., Williams, Thomas, Hughes, Joseph, Aranday-Cortes, Elihu, Asamaphan, Patawee, Ashraf, Shirin, Balcazar, Carlos, Brunker, Kirstyn, Campbell, Alasdair, Carmichael, Stephen, Davis, Chris, Dewar, Rebecca, Gallagher, Michael D., Gunson, Rory, Hill, Verity, Ho, Antonia, Jackson, Ben, James, Edward, Jesudason, Natasha, Johnson, Natasha, McWilliam Leitch, E. Carol, Li, Kathy, MacLean, Alasdair, Mair, Daniel, McAllister, David A., McCrone, John T., McDonald, Sarah E., McHugh, Martin P., Morris, A. Keith, Nichols, Jenna, Niebel, Marc, Nomikou, Kyriaki, Orton, Richard J., O’Toole, Áine, Palmarini, Massimo, Parcell, Benjamin J., Parr, Yasmin A., Rambaut, Andrew, Rooke, Stefan, Shaaban, Sharif, Shah, Rajiv, Singer, Joshua B., Smollett, Katherine, Starinskij, Igor, Tong, Lily, Sreenu, Vattipally B., Wastnedge, Elizabeth, Holden, Matthew T. G., Robertson, David L., Templeton, Kate, Thomson, Emma C.
Yayımlandı Nat Microbiol (2021)