Bayesian mixture analysis for metagenomic community profiling

par Morfopoulou, Sofia, Plagnol, Vincent
Publié dans Bioinformatics (2015)

Novel Human Embryonic Stem Cell Regulators Identified by Conserved and Distinct CpG Island Methylation State

par Pells, Steve, Koutsouraki, Eirini, Morfopoulou, Sofia, Valencia-Cadavid, Sara, Tomlinson, Simon R., Kalathur, Ravi, Futschik, Matthias E., De Sousa, Paul A.
Publié dans PLoS One (2015)

Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793)

par de-Dios, Toni, van Dorp, Lucy, Charlier, Philippe, Morfopoulou, Sofia, Lizano, Esther, Bon, Celine, Le Bitouzé, Corinne, Alvarez-Estape, Marina, Marquès-Bonet, Tomas, Balloux, François, Lalueza-Fox, Carles
Publié dans Infect Genet Evol (2020)

Mixed cytomegalovirus genotypes in HIV-positive mothers show compartmentalization and distinct patterns of transmission to infants

par Pang, Juanita, Slyker, Jennifer A, Roy, Sunando, Bryant, Josephine, Atkinson, Claire, Cudini, Juliana, Farquhar, Carey, Griffiths, Paul, Kiarie, James, Morfopoulou, Sofia, Roxby, Alison C, Tutil, Helena, Williams, Rachel, Gantt, Soren, Goldstein, Richard A, Breuer, Judith
Publié dans eLife (2020)

The influence of human genetic variation on Epstein–Barr virus sequence diversity

par Rüeger, Sina, Hammer, Christian, Loetscher, Alexis, McLaren, Paul J., Lawless, Dylan, Naret, Olivier, Khanna, Nina, Bernasconi, Enos, Cavassini, Matthias, Günthard, Huldrych F., Kahlert, Christian R., Rauch, Andri, Depledge, Daniel P., Morfopoulou, Sofia, Breuer, Judith, Zdobnov, Evgeny, Fellay, Jacques
Publié dans Sci Rep (2021)

Author Correction: The influence of human genetic variation on Epstein–Barr virus sequence diversity

par Rüeger, Sina, Hammer, Christian, Loetscher, Alexis, McLaren, Paul J., Lawless, Dylan, Naret, Olivier, Khanna, Nina, Bernasconi, Enos, Cavassini, Matthias, Günthard, Huldrych F., Kahlert, Christian R., Rauch, Andri, Depledge, Daniel P., Morfopoulou, Sofia, Breuer, Judith, Zdobnov, Evgeny, Fellay, Jacques
Publié dans Sci Rep (2021)

Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients

par Brown, Julianne R., Morfopoulou, Sofia, Hubb, Jonathan, Emmett, Warren A., Ip, Winnie, Shah, Divya, Brooks, Tony, Paine, Simon M. L., Anderson, Glenn, Virasami, Alex, Tong, C. Y. William, Clark, Duncan A., Plagnol, Vincent, Jacques, Thomas S., Qasim, Waseem, Hubank, Mike, Breuer, Judith
Publié dans Clin Infect Dis (2015)

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

par Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
Publié dans Acta Neuropathol (2016)

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

par Bharucha, Tehmina, Oeser, Clarissa, Balloux, Francois, Brown, Julianne R, Carbo, Ellen C, Charlett, Andre, Chiu, Charles Y, Claas, Eric C J, de Goffau, Marcus C, de Vries, Jutte J C, Eloit, Marc, Hopkins, Susan, Huggett, Jim F, MacCannell, Duncan, Morfopoulou, Sofia, Nath, Avindra, O'Sullivan, Denise M, Reoma, Lauren B, Shaw, Liam P, Sidorov, Igor, Simner, Patricia J, Van Tan, Le, Thomson, Emma C, van Dorp, Lucy, Wilson, Michael R, Breuer, Judith, Field, Nigel
Publié dans Lancet Infect Dis (2020)

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

par de Vries, Jutte J.C., Brown, Julianne R., Fischer, Nicole, Sidorov, Igor A., Morfopoulou, Sofia, Huang, Jiabin, Munnink, Bas B. Oude, Sayiner, Arzu, Bulgurcu, Alihan, Rodriguez, Christophe, Gricourt, Guillaume, Keyaerts, Els, Beller, Leen, Bachofen, Claudia, Kubacki, Jakub, Cordey, Samuel, Laubscher, Florian, Schmitz, Dennis, Beer, Martin, Hoeper, Dirk, Huber, Michael, Kufner, Verena, Zaheri, Maryam, Lebrand, Aitana, Papa, Anna, van Boheemen, Sander, Kroes, Aloys C.M., Breuer, Judith, Lopez-Labrador, F. Xavier, Claas, Eric C.J.
Publié dans J Clin Virol (2021)