Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases

von Brown, Julianne R., Bharucha, Tehmina, Breuer, Judith
Veröffentlicht in J Infect (2018)

The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission

von Ruis, Christopher, Roy, Sunando, Brown, Julianne R., Allen, David J., Goldstein, Richard A., Breuer, Judith
Veröffentlicht in PLoS One (2017)

Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method

von Brown, Julianne R., Roy, Sunando, Ruis, Christopher, Yara Romero, Erika, Shah, Divya, Williams, Rachel, Breuer, Judy
Veröffentlicht in J Clin Microbiol (2016)

Acute Retinal Necrosis Caused by the Zoster Vaccine Virus

von Heath, Gregory, Depledge, Daniel P, Brown, Julianne R, Hale, Anthony D, Tutil, Helena, Williams, Rachel, Breuer, Judith
Veröffentlicht in Clin Infect Dis (2017)

Norovirus Transmission Dynamics in a Pediatric Hospital Using Full Genome Sequences

von Brown, Julianne R, Roy, Sunando, Shah, Divya, Williams, Charlotte A, Williams, Rachel, Dunn, Helen, Hartley, John, Harris, Kathryn, Breuer, Judy
Veröffentlicht in Clin Infect Dis (2019)

Comparison of SARS-CoV-2 N gene real-time RT-PCR targets and commercially available mastermixes

von Brown, Julianne R., O’Sullivan, Denise M., Shah, Divya, Atkinson, Laura, Pereira, Rui P.A., Whale, Alexandra S., Busby, Eloise J., Huggett, Jim F., Harris, Kathryn
Veröffentlicht in J Virol Methods (2021)

Whole-genome enrichment and sequencing of Chlamydia trachomatisdirectly from clinical samples

von Christiansen, Mette T, Brown, Amanda C, Kundu, Samit, Tutill, Helena J, Williams, Rachel, Brown, Julianne R, Holdstock, Jolyon, Holland, Martin J, Stevenson, Simon, Dave, Jayshree, Tong, CY William, Einer-Jensen, Katja, Depledge, Daniel P, Breuer, Judith
Veröffentlicht in BMC Infect Dis (2014)

Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients

von Brown, Julianne R., Morfopoulou, Sofia, Hubb, Jonathan, Emmett, Warren A., Ip, Winnie, Shah, Divya, Brooks, Tony, Paine, Simon M. L., Anderson, Glenn, Virasami, Alex, Tong, C. Y. William, Clark, Duncan A., Plagnol, Vincent, Jacques, Thomas S., Qasim, Waseem, Hubank, Mike, Breuer, Judith
Veröffentlicht in Clin Infect Dis (2015)

High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis

von Depledge, Daniel P, Cudini, Juliana, Kundu, Samit, Atkinson, Claire, Brown, Julianne R, Haque, Tanzina, Houldcroft, Charlotte J, Koay, Evelyn S, McGill, Fiona, Milne, Richard, Whitfield, Tom, Tang, Julian W, Underhill, Gillian, Bergstrom, Tomas, Norberg, Peter, Goldstein, Richard, Solomon, Tom, Breuer, Judith
Veröffentlicht in J Infect Dis (2018)

Microbial Translocation Does Not Drive Immune Activation in Ugandan Children Infected With HIV

von Fitzgerald, Felicity C, Lhomme, Edouard, Harris, Kathryn, Kenny, Julia, Doyle, Ronan, Kityo, Cissy, Shaw, Liam P, Abongomera, George, Musiime, Victor, Cook, Adrian, Brown, Julianne R, Brooks, Anthony, Owen-Powell, Ellen, Gibb, Diana M, Prendergast, Andrew J, Sarah Walker, A, Thiebaut, Rodolphe, Klein, Nigel
Veröffentlicht in J Infect Dis (2019)

Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

von Morfopoulou, Sofia, Mee, Edward T., Connaughton, Sarah M., Brown, Julianne R., Gilmour, Kimberly, Chong, WK ‘Kling’, Duprex, W. Paul, Ferguson, Deborah, Hubank, Mike, Hutchinson, Ciaran, Kaliakatsos, Marios, McQuaid, Stephen, Paine, Simon, Plagnol, Vincent, Ruis, Christopher, Virasami, Alex, Zhan, Hong, Jacques, Thomas S., Schepelmann, Silke, Qasim, Waseem, Breuer, Judith
Veröffentlicht in Acta Neuropathol (2016)

A comprehensive characterization of chronic norovirus infection in immunodeficient hosts

von Brown, Li-An K., Ruis, Christopher, Clark, Ian, Roy, Sunando, Brown, Julianne R., Albuquerque, Adriana S., Patel, Smita Y., Miller, Joanne, Karim, Mohammed Yousuf, Dervisevic, Samir, Moore, Jennifer, Williams, Charlotte A., Cudini, Juliana, Moreira, Fernando, Neild, Penny, Seneviratne, Suranjith L., Workman, Sarita, Toumpanakis, Christos, Atkinson, Claire, Burns, Siobhan O., Breuer, Judith, Lowe, David M.
Veröffentlicht in J Allergy Clin Immunol (2019)

Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes

von Lassalle, Florent, Depledge, Daniel P., Reeves, Matthew B., Brown, Amanda C., Christiansen, Mette T., Tutill, Helena J., Williams, Rachel J., Einer-Jensen, Katja, Holdstock, Jolyon, Atkinson, Claire, Brown, Julianne R., van Loenen, Freek B., Clark, Duncan A., Griffiths, Paul D., Verjans, Georges M.G.M., Schutten, Martin, Milne, Richard S.B., Balloux, Francois, Breuer, Judith
Veröffentlicht in Virus Evol (2016)

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

von Bharucha, Tehmina, Oeser, Clarissa, Balloux, Francois, Brown, Julianne R, Carbo, Ellen C, Charlett, Andre, Chiu, Charles Y, Claas, Eric C J, de Goffau, Marcus C, de Vries, Jutte J C, Eloit, Marc, Hopkins, Susan, Huggett, Jim F, MacCannell, Duncan, Morfopoulou, Sofia, Nath, Avindra, O'Sullivan, Denise M, Reoma, Lauren B, Shaw, Liam P, Sidorov, Igor, Simner, Patricia J, Van Tan, Le, Thomson, Emma C, van Dorp, Lucy, Wilson, Michael R, Breuer, Judith, Field, Nigel
Veröffentlicht in Lancet Infect Dis (2020)

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

von de Vries, Jutte J.C., Brown, Julianne R., Fischer, Nicole, Sidorov, Igor A., Morfopoulou, Sofia, Huang, Jiabin, Munnink, Bas B. Oude, Sayiner, Arzu, Bulgurcu, Alihan, Rodriguez, Christophe, Gricourt, Guillaume, Keyaerts, Els, Beller, Leen, Bachofen, Claudia, Kubacki, Jakub, Cordey, Samuel, Laubscher, Florian, Schmitz, Dennis, Beer, Martin, Hoeper, Dirk, Huber, Michael, Kufner, Verena, Zaheri, Maryam, Lebrand, Aitana, Papa, Anna, van Boheemen, Sander, Kroes, Aloys C.M., Breuer, Judith, Lopez-Labrador, F. Xavier, Claas, Eric C.J.
Veröffentlicht in J Clin Virol (2021)

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

von Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O’Toole, Áine, Pereyaslov, Dmitriy, Beerenwinkel, Niko, Posada-Céspedes, Susana, Jablonski, Kim Philipp, Ferreira, Pedro Falé, Topolsky, Ivan, Avšič-Županc, Tatjana, Korva, Miša, Poljak, Mario, Zakotnik, Samo, Zorec, Tomaž Mark, Bragstad, Karoline, Hungnes, Olav, Stene-Johansen, Kathrine, Reusken, Chantal, Meijer, Adam, Vennema, Harry, Ruiz-Roldán, Lidia, Bracho, María Alma, García-González, Neris, Chiner-Oms, Álvaro, Cancino-Muñoz, Irving, Comas, Iñaki, Goig, Galo A, Torres-Puente, Manuela, López, Mariana G, Martínez-Priego, Llúcia, D'Auria, Giuseppe, Ferrús-Abad, Loreto, de Marco, Griselda, Galan-Vendrell, Inmaculada, Carbó-Ramirez, Sandra, Ruíz-Hueso, Paula, Coscollá, Mireia, Polackova, Katerina, Kramna, Lenka, Cinek, Ondrej, Richter, Jan, Krashias, George, Tryfonos, Christina, Bashiardes, Stavros, Koptides, Dana, Christodoulou, Christina, Bartolini, Barbara, Gruber, Cesare Em, Di Caro, Antonino, Castilletti, Concetta, Stefani, Fabrizio, Rimoldi, Sara Giordana, Romeri, Francesca, Salerno, Franco, Polesello, Stefano, Nagy, Alexander, Jirincova, Helena, Vecerova, Jaromira, Novakova, Ludmila, Cordey, Samuel, Murtskhvaladze, Marine, Kotaria, Nato, Schär, Tobias, Beisel, Christian, Vugrek, Oliver, Rokić, Filip, Trgovec-Greif, Lovro, Jurak, Igor, Rukavina, Tomislav, Sučić, Neven, Schønning, Kristian, Karst, Søren M, Kirkegaard, Rasmus H, Michaelsen, Thomas Y, Sørensen, Emil Aa, Knutson, Simon, Brandt, Jakob, Le-Quy, Vang, Sørensen, Trine, Petersen, Celine, Pedersen, Martin Schou, Larsen, Sanne Løkkegaard, Skov, Marianne Nielsine, Rasmussen, Morten, Fonager, Jannik, Fomsgaard, Anders, Maksyutov, Rinat Amirovich, Gavrilova, Elena Vasil'Evna, Pyankov, Oleg Victorovich, Bodnev, Sergey Alexandrovich, Tregubchak, Tatyana Vladimirovna, Shvalov, Alexander Nikolayevich, Antonets, Denis Victorovich, Resende, Paola Cristina, Goya, Stephanie, Perrin, Amandine, Lee, Raphael Tc, Yadahalli, Shilpa, Han, Alvin X, Russell, Colin A, Schmutz, Stefan, Zaheri, Maryam, Kufner, Verena, Huber, Michael, Trkola, Alexandra, Antwerpen, Markus, Walter, Mathias C, van der Werf, Sylvie, Gambaro, Fabiana, Behillil, Sylvie, Enouf, Vincent, Donati, Flora, Ustinova, Monta, Rovite, Vita, Klovins, Janis, Savicka, Oksana, Wienecke-Baldacchino, Anke K, Ragimbeau, Catherine, Fournier, Guillaume, Mossong, Joël, Aberle, Stephan W, Haukland, Mattias, Enkirch, Theresa, Advani, Abdolreza, Karlberg, Maria Lind, Lindsjö, Oskar Karlsson, Broddesson, Sandra, Sláviková, Monika, Ličková, Martina, Klempa, Boris, Staroňová, Edita, Tichá, Elena, Szemes, Tomáš, Rusňáková, Diana, Stadler, Tanja, Quer, Josep, Anton, Andres, Andres, Cristina, Piñana, Maria, Garcia-Cehic, Damir, Pumarola, Tomas, Izopet, Jacques, Gioula, Georgia, Exindari, Maria, Papa, Anna, Chatzidimitriou, Dimitrios, Metallidis, Symeon, Pappa, Stella, Macek Jr, Milan, Geryk, Jan, Brož, Petr, Briksí, Aleš, Hubáček, Petr, Dřevínek, Pavel, Zajac, Miroslav, Kvapil, Petr, Holub, Michal, Kvapilová, Kateřina, Novotný, Adam, Kašný, Martin, Klempt, Petr, Vapalahti, Olli, Smura, Teemu, Sironen, Tarja, Selhorst, Philippe, Anthony, Colin, Ariën, Kevin, Simon-Loriere, Etienne, Rabalski, Lukasz, Bienkowska-Szewczyk, Krystyna, Borges, Vítor, Isidro, Joana, Gomes, João Paulo, Guiomar, Raquel, Pechirra, Pedro, Costa, Inês, Duarte, Sílvia, Vieira, Luís, Pyrc, Krzysztof, Zuckerman, Neta S, Turdikulova, Shahlo, Abdullaev, Alisher, Dalimova, Dilbar, Abdurakhimov, Abror, Tagliabracci, Adriano, Alessandrini, Federica, Melchionda, Filomena, Onofri, Valerio, Turchi, Chiara, Bagnarelli, Patrizia, Menzo, Stefano, Caucci, Sara, Di Sante, Laura, Popa, Alexandra, Genger, Jakob-Wendelin, Agerer, Benedikt, Lercher, Alexander, Endler, Lukas, Smyth, Mark, Penz, Thomas, Schuster, Michael, Senekowitsch, Martin, Laine, Jan, Bock, Christoph, Bergthaler, Andreas, Shevtsov, Alexandr, Kalendar, Ruslan, Ramanculov, Yerlan, Graf, Alexander, Muenchhoff, Maximilian, Keppler, Oliver T, Krebs, Stefan, Blum, Helmut, Marcello, Alessandro, Licastro, Danilo, D'Agaro, Pierlanfranco, Laubscher, Florian, Vidanovic, Dejan, Tesovic, Bojana, Volkening, Jeremy, Clementi, Nicola, Mancini, Nicasio, Rupnik, Maja, Mahnic, Aleksander, Walker, Andreas, Houwaart, Torsten, Wienemann, Tobias, Vasconcelos, Malte Kohns, Strelow, Daniel, Jensen, Björn-Erik Ole, Senff, Tina, Hülse, Lisanna, Adams, Ortwin, Andree, Marcel, Hauka, Sandra, Feldt, Torsten, Keitel, Verena, Kindgen-Milles, Detlef, Timm, Jörg, Pfeffer, Klaus, Dilthey, Alexander T, Moore, Catherine, Ozdarendeli, Aykut, Pavel, Shaikh Terkis Islam, Yetiskin, Hazel, Aydin, Gunsu, Holyavkin, Can, Uygut, Muhammet Ali, Cevik, Ceren, Shchetinin, Alexey, Gushchin, Vladimir, Dinler-Doganay, Gizem, Doganay, Levent, Kizilboga-Akgun, Tugba, Karacan, Ilker, Pancer, Katarzyna, Maes, Piet, Martí-Carreras, Joan, Wawina-Bokalanga, Tony, Vanmechelen, Bert, Thürmer, Andrea, Wedde, Marianne, Dürrwald, Ralf, Von Kleist, Max, Drechsel, Oliver, Wolff, Thorsten, Fuchs, Stephan, Kmiecinski, Rene, Michel, Janine, Nitsche, Andreas, Casas, Inmaculada, Caballero, María Iglesias, Zaballos, Ángel, Jiménez, Pilar, Jiménez, Mercedes, Fernández, Sara Monzón, Fernández, Sarai Varona, De La Plaza, Isabel Cuesta, Fadeev, Artem, Ivanova, Anna, Sergeeva, Mariia, Stefanelli, Paola, Torok, M Estee, Hall, Grant, da Silva Filipe, Ana, Turtle, Lance, Afifi, Safiah, Mccluggage, Kathryn, Beer, Robert, Ledesma, Juan, Maksimovic, Joshua, Spellman, Karla, Hamilton, William L, Marchbank, Angela, Southgate, Joel Alexander, Underwood, Anthony, Taylor, Ben, Yeats, Corin, Abudahab, Khalil, Gemmell, Matthew R, Eccles, Richard, Lucaci, Anita, Nelson, Charlotte Abigail, Rainbow, Lucille, Whitehead, Mark, Gregory, Richard, Haldenby, Sam, Paterson, Steve, Hughes, Margaret A, Curran, Martin D, Baker, David, Tucker, Rachel, Green, Luke R, Feltwell, Theresa, Halstead, Fenella D, Wyles, Matthew, Jahun, Aminu S, Ahmad, Shazaad S Y, Georgana, Iliana, Goodfellow, Ian, Yakovleva, Anna, Meredith, Luke W, Gavriil, Artemis, Awan, Ali Raza, Fisher, Chloe, Edgeworth, Jonathan, Lynch, Jessica, Moore, Nathan, Williams, Rebecca, Kidd, Stephen P, Cortes, Nicholas, Brunker, Kirstyn, Mccrone, John T, Quick, Joshua, Duckworth, Nichola, Walsh, Sarah, Sloan, Tim, Ludden, Catherine, George, Ryan P, Eltringham, Gary, Brown, Julianne R, Aranday-Cortes, Elihu, Shepherd, James G, Hughes, Joseph, Li, Kathy K, Williams, Thomas C, Johnson, Natasha, Jesudason, Natasha, Mair, Daniel, Thomson, Emma, Shah, Rajiv, Parr, Yasmin A, Carmichael, Stephen, Robertson, David L, Nomikou, Kyriaki, Broos, Alice, Niebel, Marc, Smollett, Katherine, Tong, Lily, Miah, Shahjahan, Wittner, Anita, Phillips, Nicole, Payne, Brendan, Dewar, Rebecca, Holmes, Alison, Bolt, Frances, Price, James R, Mookerjee, Siddharth, Sethi, Dheeraj K, Potter, Will, Stanley, Rachael, Prakash, Reenesh, Dervisevic, Samir, Graham, Jonathan Clive, Nelson, Andrew, Smith, Darren, Young, Gregory R, Yew, Wen Chyin, Todd, John A, Trebes, Amy, Andersson, Monique, Bull, Matthew, Watkins, Joanne, Birchley, Alec, Gatica-Wilcox, Bree, Gilbert, Lauren, Kumžiene-Summerhayes, Sara, Rey, Sara, Chauhan, Anoop, Butcher, Ethan, Bicknell, Kelly, Elliott, Scott, Glaysher, Sharon, Lackenby, Angie, Bibby, David, Platt, Steven, Mohamed, Hodan, Machin, Nicholas William, Mbisa, Jean Lutamyo, Evans, Jonathan, Perry, Malorie, Pacchiarini, Nicole, Corden, Sally, Adams, Alexander Geraint, Gaskin, Amy, Coombs, Jason, Graham, Lee John, Cottrell, Simon, Morgan, Mari, Gifford, Laura, Kolyva, Anastasia, Rudder, Steven John, Trotter, Alexander J, Mather, Alison E, Aydin, Alp, Page, Andrew J, Kay, Gemma L, de Oliveira Martins, Leonardo, Yasir, Muhammad, Alikhan, Nabil-Fareed, Thomson, Nicholas M, Gilroy, Rachel, Kingsley, Robert A, O'Grady, Justin, Gutierrez, Ana Victoria, Diaz, Maria, Le Viet, Thanh, Tedim, Ana P, Adriaenssens, Evelien M, Mcclure, C Patrick, Moore, Christopher, Sang, Fei, Clark, Gemma, Howson-Wells, Hannah C, Debebe, Johnny, Ball, Jonathan, Chappell, Joseph, Khakh, Manjinder, Carlile, Matthew, Loose, Matthew, Lister, Michelle M, Holmes, Nadine, Tsoleridis, Theocharis, Fleming, Vicki M, Wright, Victoria, Smith, Wendy, Gallagher, Michael D, Parker, Matthew, Partridge, David G, Evans, Cariad, Baker, Paul, Essex, Sarah, Liggett, Steven, Keeley, Alexander J, Bashton, Matthew, Rooke, Stefan, Dervisevic, Samir, Meader, Emma Jane, Balcazar Lopez, Carlos Enrique, Angyal, Adrienn, Kristiansen, Mark, Tutill, Helena J, Findlay, Jacqueline, Mestek-Boukhibar, Lamia, Forrest, Leysa, Dyal, Patricia, Williams, Rachel J, Panchbhaya, Yasmin, Williams, Charlotte A, Roy, Sunando, Pandey, Sarojini, Stockton, Jo, Loman, Nicholas J, Poplawski, Radoslaw, Nicholls, Samuel, Rowe, W P M, Khokhar, Fahad, Pinckert, Malte Lars, Hosmillo, Myra, Chaudhry, Yasmin, Caller, Laura G, Davidson, Rose K, Griffith, Luke, Rambaut, Andrew, Jackson, Ben, Colquhoun, Rachel, Hill, Verity, Nichols, Jenna, Asamaphan, Patawee, Darby, Alistair, Jackson, Kathryn A, Iturriza-Gomara, Miren, Vamos, Ecaterina Edith, Green, Angie, Aanensen, David, Bonsall, David, Buck, David, Macintyre-Cockett, George, de Cesare, Mariateresa, Pybus, Oliver, Golubchik, Tanya, Scarlett, Garry, Loveson, Katie F, Robson, Samuel C, Beckett, Angela, Lindsey, Benjamin, Groves, Danielle C, Parsons, Paul J, Mchugh, Martin P, Barnes, James Daniel, Manso, Carmen F, Grammatopoulos, Dimitris, Menger, Katja Elisabeth, Harrison, Ewan, Gunson, Rory, Peacock, Sharon J, Gonzalez, Gabriel, Carr, Michael, Mihaela, Lazar, Popovici, Odette, Brytting, Mia, Bresner, Catherine, Fuller, William, Workman, Trudy, Mentis, Andreas F, Kossyvakis, Athanasios, Karamitros, Timokratis, Pogka, Vasiliki, Kalliaropoulos, Antonios, Horefti, Elina, Kontou, Aspasia, Martinez-Gonzalez, Beatriz, Labropoulou, Voula, Voulgari-Kokota, Androniki, Evangelidou, Maria, Bizta, Panagiota, Belimezi, Maria, Lambrechts, Laurens, Doymaz, Mehmet Z, Yazici, Merve Kalkan, Cetin, Nesibe S, Karaaslan, Elif, Kallio-Kokko, Hannimari, Virtanen, Jenni, Suvanto, Maija, Nguyen, Phuoc Truong, Ellonen, Pekka, Hannula, Sari, Kangas, Harri, Sreenu, Vattipally B, Burián, Katalin, Terhes, Gabriella, Gombos, Katalin, Gyenesei, Attila, Urbán, Péter, Herczeg, Róbert, Jakab, Ferenc, Kemenesi, Gábor, Tóth, Gábor Endre, Somogyi, Balázs, Zana, Brigitta, Zeghbib, Safia, Kuczmog, Anett, Földes, Fanni, Lanszki, Zsófia, Madai, Mónika, Papp, Henrietta, Nagy, Ágnes, Pereszlényi, Csaba István, Babinszky, Gergely Csaba, Dudás, Gábor, Csoma, Eszter, Abou Tayoun, Ahmad N, Alsheikh-Ali, Alawi A, Loney, Tom, Nowotny, Norbert, Abdul-Wahab, Osama, Gonzalez-Candelas, Fernando, Andersen, Martin H, Taylor, Sarah
Veröffentlicht in Euro Surveill (2020)