How complete are current yeast and human protein-interaction networks?

por Hart, G Traver, Ramani, Arun K, Marcotte, Edward M
Publicado 2006

Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome

por Ramani, Arun K, Bunescu, Razvan C, Mooney, Raymond J, Marcotte, Edward M
Publicado 2005

Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function

por Verster, Adrian J., Ramani, Arun K., McKay, Sheldon J., Fraser, Andrew G.
Publicado 2014

Identification of complex genomic rearrangements in cancers using CouGaR

por Dzamba, Misko, Ramani, Arun K., Buczkowicz, Pawel, Jiang, Yue, Yu, Man, Hawkins, Cynthia, Brudno, Michael
Publicado en Genome Res (2017)

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans

por Ramani, Arun K, Nelson, Andrew C, Kapranov, Philipp, Bell, Ian, Gingeras, Thomas R, Fraser, Andrew G
Publicado 2009

A map of human protein interactions derived from co-expression of human mRNAs and their orthologs

por Ramani, Arun K, Li, Zhihua, Hart, G Traver, Carlson, Mark W, Boutz, Daniel R, Marcotte, Edward M
Publicado 2008

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

por Ip, Joanna Y., Schmidt, Dominic, Pan, Qun, Ramani, Arun K., Fraser, Andrew G., Odom, Duncan T., Blencowe, Benjamin J.
Publicado 2011

C. elegans SUP-46, an HNRNPM family RNA-binding protein that prevents paternally-mediated epigenetic sterility

por Johnston, Wendy L., Krizus, Aldis, Ramani, Arun K., Dunham, Wade, Youn, Ji Young, Fraser, Andrew G., Gingras, Anne-Claude, Dennis, James W.
Publicado en BMC Biol (2017)

A pair of RNA binding proteins controls networks of splicing events contributing to specialization of neural cell types

por Norris, Adam D., Gao, Shangbang, Norris, Megan L., Ray, Debashish, Ramani, Arun K., Fraser, Andrew G., Morris, Quaid, Hughes, Timothy R., Zhen, Mei, Calarco, John A.
Publicado 2014

Utilization of Whole Exome Sequencing Data to Identify Clinically Relevant Pharmacogenomic Variants in Pediatric Inflammatory Bowel Disease

por Mulder, Daniel J., Khalouei, Sam, Warner, Neil, Gonzaga-Jauregui, Claudia, Church, Peter C., Walters, Thomas D., Ramani, Arun K., Griffiths, Anne M., Cohn, Iris, Muise, Aleixo M.
Publicado en Clin Transl Gastroenterol (2020)

Genome-wide analysis of alternative splicing in Caenorhabditis elegans

por Ramani, Arun K., Calarco, John A., Pan, Qun, Mavandadi, Sepand, Wang, Ying, Nelson, Andrew C., Lee, Leo J., Morris, Quaid, Blencowe, Benjamin J., Zhen, Mei, Fraser, Andrew G.
Publicado 2011

Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease

por Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.
Publicado en Am J Hum Genet (2019)

Expanding the Boundaries of RNA Sequencing as a Diagnostic Tool for Rare Mendelian Disease

por Gonorazky, Hernan D., Naumenko, Sergey, Ramani, Arun K., Nelakuditi, Viswateja, Mashouri, Pouria, Wang, Peiqui, Kao, Dennis, Ohri, Krish, Viththiyapaskaran, Senthuri, Tarnopolsky, Mark A., Mathews, Katherine D., Moore, Steven A., Osorio, Andres N., Villanova, David, Kemaladewi, Dwi U., Cohn, Ronald D., Brudno, Michael, Dowling, James J.
Publicado en Am J Hum Genet (2019)

CReSCENT: CanceR Single Cell ExpressioN Toolkit

por Mohanraj, Suluxan, Díaz-Mejía, J Javier, Pham, Martin D, Elrick, Hillary, Husić, Mia, Rashid, Shaikh, Luo, Ping, Bal, Prabnur, Lu, Kevin, Patel, Samarth, Mahalanabis, Alaina, Naidas, Alaine, Christensen, Erik, Croucher, Danielle, Richards, Laura M, Shooshtari, Parisa, Brudno, Michael, Ramani, Arun K, Pugh, Trevor J
Publicado en Nucleic Acids Res (2020)

Erratum: Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics

por Hoffman, Lindsey M., DeWire, Mariko, Ryall, Scott, Buczkowicz, Pawel, Leach, James, Miles, Lili, Ramani, Arun K., Brudno, Michael, Kumar, Shiva Senthil, Drissi, Rachid, Dexheimer, Phillip, Salloum, Ralph, Chow, Lionel, Hummel, Trent, Stevenson, Charles, Lu, Q. Richard, Jones, Blaise, Witte, David, Aronow, Bruce, Hawkins, Cynthia E., Fouladi, Maryam
Publicado en Acta Neuropathol Commun (2016)

Prevalence and Clinical Features of Inflammatory Bowel Diseases Associated with Monogenic Variants, Identified by Whole-exome Sequencing in 1000 Children at a Single Center

por Crowley, Eileen, Warner, Neil, Pan, Jie, Khalouei, Sam, Elkadri, Abdul, Fiedler, Karoline, Foong, Justin, Turinsky, Andrei L., Bronte-Tinkew, Dana, Zhang, Shiqi, Hu, Jamie, Tian, David, Li, Dalin, Horowitz, Julie, Siddiqui, Iram, Upton, Julia, Roifman, Chaim M., Church, Peter C., Wall, Donna A., Ramani, Arun K., Kotlarz, Daniel, Klein, Christoph, Uhlig, Holm, Snapper, Scott B., Gonzaga-Jauregui, Claudia, Paterson, Andrew, McGovern, Dermot PB., Brudno, Michael, Walters, Thomas D., Griffiths, Anne M., Muise, Aleixo M.
Publicado en Gastroenterology (2020)

Alterations in ALK/ROS1/NTRK/MET drive a group of infantile hemispheric gliomas

por Guerreiro Stucklin, Ana S., Ryall, Scott, Fukuoka, Kohei, Zapotocky, Michal, Lassaletta, Alvaro, Li, Christopher, Bridge, Taylor, Kim, Byungjin, Arnoldo, Anthony, Kowalski, Paul E., Zhong, Yvonne, Johnson, Monique, Li, Claire, Ramani, Arun K., Siddaway, Robert, Nobre, Liana Figueiredo, de Antonellis, Pasqualino, Dunham, Christopher, Cheng, Sylvia, Boué, Daniel R., Finlay, Jonathan L., Coven, Scott L., de Prada, Inmaculada, Perez-Somarriba, Marta, Faria, Claudia C., Grotzer, Michael A., Rushing, Elisabeth, Sumerauer, David, Zamecnik, Josef, Krskova, Lenka, Garcia Ariza, Miguel, Cruz, Ofelia, Morales La Madrid, Andres, Solano, Palma, Terashima, Keita, Nakano, Yoshiko, Ichimura, Koichi, Nagane, Motoo, Sakamoto, Hiroaki, Gil-da-Costa, Maria Joao, Silva, Roberto, Johnston, Donna L., Michaud, Jean, Wilson, Bev, van Landeghem, Frank K. H., Oviedo, Angelica, McNeely, P. Daniel, Crooks, Bruce, Fried, Iris, Zhukova, Nataliya, Hansford, Jordan R., Nageswararao, Amulya, Garzia, Livia, Shago, Mary, Brudno, Michael, Irwin, Meredith S., Bartels, Ute, Ramaswamy, Vijay, Bouffet, Eric, Taylor, Michael D., Tabori, Uri, Hawkins, Cynthia
Publicado en Nat Commun (2019)