SSPred: A prediction server based on SVM for the identification and classification of proteins involved in bacterial secretion systems

door Pundhir, Sachin, Kumar, Anil
Gepubliceerd in 2011

MicroRNA discovery by similarity search to a database of RNA-seq profiles

door Pundhir, Sachin, Gorodkin, Jan
Gepubliceerd in 2013

Differential and coherent processing patterns from small RNAs

door Pundhir, Sachin, Gorodkin, Jan
Gepubliceerd in Sci Rep (2015)

Emerging applications of read profiles towards the functional annotation of the genome

door Pundhir, Sachin, Poirazi, Panayiota, Gorodkin, Jan
Gepubliceerd in Front Genet (2015)

Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality

door Pundhir, Sachin, Bagger, Frederik O., Lauridsen, Felicia B., Rapin, Nicolas, Porse, Bo T.
Gepubliceerd in Nucleic Acids Res (2016)

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns

door Langenberger, David, Pundhir, Sachin, Ekstrøm, Claus T., Stadler, Peter F., Hoffmann, Steve, Gorodkin, Jan
Gepubliceerd in 2012

Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans

door Nepal, Chirag, Taranta, Andrzej, Hadzhiev, Yavor, Pundhir, Sachin, Mydel, Piotr, Lenhard, Boris, Müller, Ferenc, Andersen, Jesper B.
Gepubliceerd in iScience (2020)

EssOilDB: a database of essential oils reflecting terpene composition and variability in the plant kingdom

door Kumari, Sangita, Pundhir, Sachin, Priya, Piyush, Jeena, Ganga, Punetha, Ankita, Chawla, Konika, Firdos Jafaree, Zohra, Mondal, Subhasish, Yadav, Gitanjali
Gepubliceerd in Database (Oxford) (2014)

The splicing factor RBM25 controls MYC activity in acute myeloid leukemia

door Ge, Ying, Schuster, Mikkel Bruhn, Pundhir, Sachin, Rapin, Nicolas, Bagger, Frederik Otzen, Sidiropoulos, Nikos, Hashem, Nadia, Porse, Bo Torben
Gepubliceerd in Nat Commun (2019)

The ASXL1-G643Wvariant accelerates the development of CEBPA mutant acute myeloid leukemia

door D’Altri, Teresa, Wilhelmson, Anna S., Schuster, Mikkel B., Wenzel, Anne, Kalvisa, Adrija, Pundhir, Sachin, Hansen, Anne Meldgaard, Porse, Bo T.
Gepubliceerd in Haematologica (2020)

BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis

door Bagger, Frederik Otzen, Sasivarevic, Damir, Sohi, Sina Hadi, Laursen, Linea Gøricke, Pundhir, Sachin, Sønderby, Casper Kaae, Winther, Ole, Rapin, Nicolas, Porse, Bo T.
Gepubliceerd in Nucleic Acids Res (2016)

Structured RNAs and synteny regions in the pig genome

door Anthon, Christian, Tafer, Hakim, Havgaard, Jakob H, Thomsen, Bo, Hedegaard, Jakob, Seemann, Stefan E, Pundhir, Sachin, Kehr, Stephanie, Bartschat, Sebastian, Nielsen, Mathilde, Nielsen, Rasmus O, Fredholm, Merete, Stadler, Peter F, Gorodkin, Jan
Gepubliceerd in 2014

Epigenetic and Transcriptomic Characterization of Pure Adipocyte Fractions From Obese Pigs Identifies Candidate Pathways Controlling Metabolism

door Jacobsen, Mette Juul, Havgaard, Jakob H., Anthon, Christian, Mentzel, Caroline M. Junker, Cirera, Susanna, Krogh, Poula Maltha, Pundhir, Sachin, Karlskov-Mortensen, Peter, Bruun, Camilla S., Lesnik, Philippe, Guerin, Maryse, Gorodkin, Jan, Jørgensen, Claus B., Fredholm, Merete, Barrès, Romain
Gepubliceerd in Front Genet (2019)

Mutant CEBPA directly drives the expression of the targetable tumor-promoting factor CD73 in AML

door Jakobsen, Janus S., Laursen, Linea G., Schuster, Mikkel B., Pundhir, Sachin, Schoof, Erwin, Ge, Ying, d’Altri, Teresa, Vitting-Seerup, Kristoffer, Rapin, Nicolas, Gentil, Coline, Jendholm, Johan, Theilgaard-Mönch, Kim, Reckzeh, Kristian, Bullinger, Lars, Döhner, Konstanze, Hokland, Peter, Fitzgibbon, Jude, Porse, Bo T.
Gepubliceerd in Sci Adv (2019)