Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix

Por Havgaard, Jakob H, Torarinsson, Elfar, Gorodkin, Jan
Publicado em 2007

The foldalign web server for pairwise structural RNA alignment and mutual motif search

Por Havgaard, Jakob H., Lyngsø, Rune B., Gorodkin, Jan
Publicado em 2005

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

Por Torarinsson, Elfar, Sawera, Milena, Havgaard, Jakob H., Fredholm, Merete, Gorodkin, Jan
Publicado em 2006

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment

Por Sundfeld, Daniel, Havgaard, Jakob H., de Melo, Alba C. M. A., Gorodkin, Jan
Publicado no Bioinformatics (2016)

De novo prediction of structured RNAs from genomic sequences

Por Gorodkin, Jan, Hofacker, Ivo L., Torarinsson, Elfar, Yao, Zizhen, Havgaard, Jakob H., Ruzzo, Walter L.
Publicado no Trends Biotechnol (2009)

Optimizing RNA structures by sequence extensions using RNAcop

Por Hecker, Nikolai, Christensen-Dalsgaard, Mikkel, Seemann, Stefan E., Havgaard, Jakob H., Stadler, Peter F., Hofacker, Ivo L., Nielsen, Henrik, Gorodkin, Jan
Publicado no Nucleic Acids Res (2015)

Semiautomated improvement of RNA alignments

Por Andersen, Ebbe S., Lind-Thomsen, Allan, Knudsen, Bjarne, Kristensen, Susie E., Havgaard, Jakob H., Torarinsson, Elfar, Larsen, Niels, Zwieb, Christian, Sestoft, Peter, Kjems, Jørgen, Gorodkin, Jan
Publicado em 2007

Structured RNAs and synteny regions in the pig genome

Por Anthon, Christian, Tafer, Hakim, Havgaard, Jakob H, Thomsen, Bo, Hedegaard, Jakob, Seemann, Stefan E, Pundhir, Sachin, Kehr, Stephanie, Bartschat, Sebastian, Nielsen, Mathilde, Nielsen, Rasmus O, Fredholm, Merete, Stadler, Peter F, Gorodkin, Jan
Publicado em 2014

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Por Gorodkin, Jan, Cirera, Susanna, Hedegaard, Jakob, Gilchrist, Michael J, Panitz, Frank, Jørgensen, Claus, Scheibye-Knudsen, Karsten, Arvin, Troels, Lumholdt, Steen, Sawera, Milena, Green, Trine, Nielsen, Bente J, Havgaard, Jakob H, Rosenkilde, Carina, Wang, Jun, Li, Heng, Li, Ruiqiang, Liu, Bin, Hu, Songnian, Dong, Wei, Li, Wei, Yu, Jun, Wang, Jian, Stærfeldt, Hans-Henrik, Wernersson, Rasmus, Madsen, Lone B, Thomsen, Bo, Hornshøj, Henrik, Bujie, Zhan, Wang, Xuegang, Wang, Xuefei, Bolund, Lars, Brunak, Søren, Yang, Huanming, Bendixen, Christian, Fredholm, Merete
Publicado em 2007