Bridging the Gap between Stochastic and Deterministic Regimes in the Kinetic Simulations of the Biochemical Reaction Networks

door Puchałka, Jacek, Kierzek, Andrzej M.
Gepubliceerd in 2004

Novel Spontaneous Deletion of Artemis Exons 10 and 11 in Mice Leads to T- and B-Cell Deficiency

door Barthels, Christian, Puchałka, Jacek, Racek, Tomas, Klein, Christoph, Brocker, Thomas
Gepubliceerd in 2013

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

door Oberhardt, Matthew A., Puchałka, Jacek, Martins dos Santos, Vítor A. P., Papin, Jason A.
Gepubliceerd in 2011

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

door Kremling, Andreas, Pflüger-Grau, Katharina, Chavarría, Max, Puchalka, Jacek, dos Santos, Vitor Martins, Lorenzo, Víctor de
Gepubliceerd in 2012

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

door Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.
Gepubliceerd in 2008

Multicongenic fate mapping quantification of dynamics of thymus colonization

door Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Witzlau, Katrin, Reinhardt, Annika, Förster, Reinhold, Pabst, Oliver, Prinz, Immo, Krueger, Andreas
Gepubliceerd in J Exp Med (2015)

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition

door van Duuren, Jozef BJH, Puchałka, Jacek, Mars, Astrid E, Bücker, René, Eggink, Gerrit, Wittmann, Christoph, dos Santos, Vítor AP Martins
Gepubliceerd in 2013

From the Environment to the Host: Re-Wiring of the Transcriptome of Pseudomonas aeruginosa from 22°C to 37°C

door Barbier, Mariette, Damron, F. Heath, Bielecki, Piotr, Suárez-Diez, María, Puchałka, Jacek, Albertí, Sebastian, dos Santos, Vitor Martins, Goldberg, Joanna B.
Gepubliceerd in 2014

Differential diagnosis in ulcerative colitis in an adolescent: Chronic granulomatous disease needs extra attention

door Kotlarz, Daniel, Egritas Gurkan, Odul, Haskologlu, Zehra Sule, Ekinci, Ozgur, Aksu Unlusoy, Aysel, Gürcan Kaya, Neslihan, Puchalka, Jacek, Klein, Cristoph, Dalgic, Buket
Gepubliceerd in World J Gastrointest Pathophysiol (2017)

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

door Puchałka, Jacek, Oberhardt, Matthew A., Godinho, Miguel, Bielecka, Agata, Regenhardt, Daniela, Timmis, Kenneth N., Papin, Jason A., Martins dos Santos, Vítor A. P.
Gepubliceerd in 2008

Absence of IFN-β impairs antigen presentation capacity of splenic dendritic cells via down-regulation of Hsp70

door Ziętara, Natalia, Łyszkiewicz, Marcin, Gekara, Nelson, Puchałka, Jacek, Martins Dos Santos, Vitor A.P., Hunt, Clayton R., Pandita, Tej K., Lienenklaus, Stefan, Weiss, Siegfried
Gepubliceerd in 2009

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics app...

door Poblete-Castro, Ignacio, Escapa, Isabel F, Jäger, Christian, Puchalka, Jacek, Chi Lam, Carolyn Ming, Schomburg, Dietmar, Prieto, María Auxiliadora, Martins dos Santos, Vítor AP
Gepubliceerd in 2012

In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs

door Bielecki, Piotr, Puchałka, Jacek, Wos-Oxley, Melissa L., Loessner, Holger, Glik, Justyna, Kawecki, Marek, Nowak, Mariusz, Tümmler, Burkhard, Weiss, Siegfried, dos Santos, Vítor A. P. Martins
Gepubliceerd in 2011

Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing

door Rossmann, Friederike S., Racek, Tomas, Wobser, Dominique, Puchalka, Jacek, Rabener, Elaine M., Reiger, Matthias, Hendrickx, Antoni P. A., Diederich, Ann-Kristin, Jung, Kirsten, Klein, Christoph, Huebner, Johannes
Gepubliceerd in PLoS Pathog (2015)

Immunoglobulins drive terminal maturation of splenic dendritic cells

door Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Pei, Gang, Gutierrez, Maximiliano Gabriel, Lienenklaus, Stefan, Hobeika, Elias, Reth, Michael, Martins dos Santos, Vitor A. P., Krueger, Andreas, Weiss, Siegfried
Gepubliceerd in 2013

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling

door Wodke, Judith A H, Puchałka, Jacek, Lluch-Senar, Maria, Marcos, Josep, Yus, Eva, Godinho, Miguel, Gutiérrez-Gallego, Ricardo, dos Santos, Vitor A P Martins, Serrano, Luis, Klipp, Edda, Maier, Tobias
Gepubliceerd in 2013

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies

door Ballerstedt, Hendrik, Volkers, Rita J. M., Mars, Astrid E., Hallsworth, John E., Santos, Vitor A. Martins dos, Puchalka, Jaçek, van Duuren, Joost, Eggink, Gerrit, Timmis, Ken N., de Bont, Jan A. M., Wery, Jan
Gepubliceerd in 2007

miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity

door Łyszkiewicz, Marcin, Winter, Samantha J., Witzlau, Katrin, Föhse, Lisa, Brownlie, Rebecca, Puchałka, Jacek, Verheyden, Nikita A., Kunze-Schumacher, Heike, Imelmann, Esther, Blume, Jonas, Raha, Solaiman, Sekiya, Takashi, Yoshimura, Akihiko, Frueh, Jochen T., Ullrich, Evelyn, Huehn, Jochen, Weiss, Siegfried, Gutierrez, Maximiliano G., Prinz, Immo, Zamoyska, Rose, Ziętara, Natalia, Krueger, Andreas
Gepubliceerd in PLoS Biol (2019)

Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

door Varga, John J., Barbier, Mariette, Mulet, Xavier, Bielecki, Piotr, Bartell, Jennifer A., Owings, Joshua P., Martinez-Ramos, Inmaculada, Hittle, Lauren E., Davis, Michael R., Damron, F. Heath, Liechti, George W., Puchałka, Jacek, dos Santos, Vitor A. P. Martins, Ernst, Robert K., Papin, Jason A., Albertí, Sebastian, Oliver, Antonio, Goldberg, Joanna B.
Gepubliceerd in BMC Genomics (2015)

Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells

door Łyszkiewicz, Marcin, Ziętara, Natalia, Frey, Laura, Pannicke, Ulrich, Stern, Marcel, Liu, Yanshan, Fan, Yanxin, Puchałka, Jacek, Hollizeck, Sebastian, Somekh, Ido, Rohlfs, Meino, Yilmaz, Tuğba, Ünal, Ekrem, Karakukcu, Musa, Patiroğlu, Türkan, Kellerer, Christina, Karasu, Ebru, Sykora, Karl-Walter, Lev, Atar, Simon, Amos, Somech, Raz, Roesler, Joachim, Hoenig, Manfred, Keppler, Oliver T., Schwarz, Klaus, Klein, Christoph
Gepubliceerd in Nat Commun (2020)