Studying microbial functionality within the gut ecosystem by systems biology

por Hornung, Bastian, Martins dos Santos, Vitor A. P., Smidt, Hauke, Schaap, Peter J.
Publicado no Genes Nutr (2018)

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

por Oberhardt, Matthew A., Puchałka, Jacek, Martins dos Santos, Vítor A. P., Papin, Jason A.
Publicado em 2011

Pseudomonas putida KT2440 is HV1 certified, not GRAS

por Kampers, Linde F. C., Volkers, Rita J. M., Martins dos Santos, Vitor A. P.
Publicado no Microb Biotechnol (2019)

Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

por Zondervan, Niels A., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria, Saccenti, Edoardo
Publicado no BMC Genomics (2021)

Correction to: Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential

por Zondervan, Niels A., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria, Saccenti, Edoardo
Publicado no BMC Genomics (2021)

Efficient Reconstruction of Predictive Consensus Metabolic Network Models

por van Heck, Ruben G. A., Ganter, Mathias, Martins dos Santos, Vitor A. P., Stelling, Joerg
Publicado no PLoS Comput Biol (2016)

DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems

por Smith, Robert W., van Rosmalen, Rik P., Martins dos Santos, Vitor A. P., Fleck, Christian
Publicado no BMC Syst Biol (2018)

Modeling the Metabolic State of Mycobacterium tuberculosis Upon Infection

por Rienksma, Rienk A., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado no Front Cell Infect Microbiol (2018)

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular Mycobacterium tuberculosis

por Rienksma, Rienk A., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado no Front Cell Infect Microbiol (2019)

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View

por Saccenti, Edoardo, Nieuwenhuijse, David, Koehorst, Jasper J., Martins dos Santos, Vitor A. P., Schaap, Peter J.
Publicado no PLoS One (2015)

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain–Barré–Stohl syndrome

por Gaspari, Erika, Koehorst, Jasper J., Frey, Joachim, Martins dos Santos, Vitor A.P., Suarez‐Diez, Maria
Publicado no Microb Biotechnol (2021)

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

por Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.
Publicado em 2008

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

por Koehorst, Jasper J., Saccenti, Edoardo, Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado no F1000Res (2017)

SEVA 3.1: enabling interoperability of DNA assembly among the SEVA, BioBricks and Type IIS restriction enzyme standards

por Damalas, Stamatios G., Batianis, Christos, Martin‐Pascual, Maria, de Lorenzo, Victor, Martins dos Santos, Vitor A. P.
Publicado no Microb Biotechnol (2020)

Random and cyclical deletion of large DNA segments in the genome of Pseudomonas putida

por Leprince, Audrey, de Lorenzo, Víctor, Völler, Petra, van Passel, Mark W J, Martins dos Santos, Vitor A P
Publicado em 2012

Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger

por Sloothaak, Jasper, Odoni, Dorett I., Martins dos Santos, Vitor A. P., Schaap, Peter J., Tamayo-Ramos, Juan Antonio
Publicado no PLoS Genet (2016)

Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them

por Benis, Nirupama, Kar, Soumya K., Martins dos Santos, Vitor A. P., Smits, Mari A., Schokker, Dirkjan, Suarez-Diez, Maria
Publicado no Front Physiol (2017)

From correlation to causation: analysis of metabolomics data using systems biology approaches

por Rosato, Antonio, Tenori, Leonardo, Cascante, Marta, De Atauri Carulla, Pedro Ramon, Martins dos Santos, Vitor A. P., Saccenti, Edoardo
Publicado no Metabolomics (2018)

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

por Zondervan, Niels A., van Dam, Jesse C. J., Schaap, Peter J., Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado no Int J Mol Sci (2018)

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

por Gaspari, Erika, Malachowski, Antoni, Garcia-Morales, Luis, Burgos, Raul, Serrano, Luis, Martins dos Santos, Vitor A. P., Suarez-Diez, Maria
Publicado no NPJ Syst Biol Appl (2020)