Genome-scale modeling and human disease: an overview

nork Oberhardt, Matthew A., Gianchandani, Erwin P.
Argitaratua izan da Front Physiol (2015)

Applications of genome-scale metabolic reconstructions

nork Oberhardt, Matthew A, Palsson, Bernhard Ø, Papin, Jason A
Argitaratua 2009

Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection

nork Oberhardt, Matthew A., Goldberg, Joanna B., Hogardt, Michael, Papin, Jason A.
Argitaratua 2010

A Novel Nutritional Predictor Links Microbial Fastidiousness with Lowered Ubiquity, Growth Rate, and Cooperativeness

nork Zarecki, Raphy, Oberhardt, Matthew A., Reshef, Leah, Gophna, Uri, Ruppin, Eytan
Argitaratua 2014

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

nork Oberhardt, Matthew A., Puchałka, Jacek, Martins dos Santos, Vítor A. P., Papin, Jason A.
Argitaratua 2011

Predicting biological system objectives de novo from internal state measurements

nork Gianchandani, Erwin P, Oberhardt, Matthew A, Burgard, Anthony P, Maranas, Costas D, Papin, Jason A
Argitaratua 2008

Harnessing the landscape of microbial culture media to predict new organism–media pairings

nork Oberhardt, Matthew A., Zarecki, Raphy, Gronow, Sabine, Lang, Elke, Klenk, Hans-Peter, Gophna, Uri, Ruppin, Eytan
Argitaratua izan da Nat Commun (2015)

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

nork Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.
Argitaratua 2008

Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms

nork Zarecki, Raphy, Oberhardt, Matthew A., Yizhak, Keren, Wagner, Allon, Shtifman Segal, Ella, Freilich, Shiri, Henry, Christopher S., Gophna, Uri, Ruppin, Eytan
Argitaratua 2014

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

nork Puchałka, Jacek, Oberhardt, Matthew A., Godinho, Miguel, Bielecka, Agata, Regenhardt, Daniela, Timmis, Kenneth N., Papin, Jason A., Martins dos Santos, Vítor A. P.
Argitaratua 2008

Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5’-Phosphate Production in E. coli

nork Oberhardt, Matthew A., Zarecki, Raphy, Reshef, Leah, Xia, Fangfang, Duran-Frigola, Miquel, Schreiber, Rachel, Henry, Christopher S., Ben-Tal, Nir, Dwyer, Daniel J., Gophna, Uri, Ruppin, Eytan
Argitaratua izan da PLoS Comput Biol (2016)

Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior

nork Robertson, Scott H, Smith, Chris K, Langhans, Anna L, McLinden, Sara E, Oberhardt, Matthew A, Jakab, Karoly R, Dzamba, Bette, DeSimone, Douglas W, Papin, Jason A, Peirce, Shayn M
Argitaratua 2007

Systems Analysis of Small Signaling Modules Relevant to Eight Human Diseases

nork Benedict, Kelly F., Mac Gabhann, Feilim, Amanfu, Robert K., Chavali, Arvind K., Gianchandani, Erwin P., Glaw, Lydia S., Oberhardt, Matthew A., Thorne, Bryan C., Yang, Jason H., Papin, Jason A., Peirce, Shayn M., Saucerman, Jeffrey J., Skalak, Thomas C.
Argitaratua 2010