Bridging the Gap between Stochastic and Deterministic Regimes in the Kinetic Simulations of the Biochemical Reaction Networks

Por Puchałka, Jacek, Kierzek, Andrzej M.
Publicado em 2004

Novel Spontaneous Deletion of Artemis Exons 10 and 11 in Mice Leads to T- and B-Cell Deficiency

Por Barthels, Christian, Puchałka, Jacek, Racek, Tomas, Klein, Christoph, Brocker, Thomas
Publicado em 2013

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

Por Oberhardt, Matthew A., Puchałka, Jacek, Martins dos Santos, Vítor A. P., Papin, Jason A.
Publicado em 2011

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

Por Kremling, Andreas, Pflüger-Grau, Katharina, Chavarría, Max, Puchalka, Jacek, dos Santos, Vitor Martins, Lorenzo, Víctor de
Publicado em 2012

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

Por Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.
Publicado em 2008

Multicongenic fate mapping quantification of dynamics of thymus colonization

Por Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Witzlau, Katrin, Reinhardt, Annika, Förster, Reinhold, Pabst, Oliver, Prinz, Immo, Krueger, Andreas
Publicado no J Exp Med (2015)

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition

Por van Duuren, Jozef BJH, Puchałka, Jacek, Mars, Astrid E, Bücker, René, Eggink, Gerrit, Wittmann, Christoph, dos Santos, Vítor AP Martins
Publicado em 2013

From the Environment to the Host: Re-Wiring of the Transcriptome of Pseudomonas aeruginosa from 22°C to 37°C

Por Barbier, Mariette, Damron, F. Heath, Bielecki, Piotr, Suárez-Diez, María, Puchałka, Jacek, Albertí, Sebastian, dos Santos, Vitor Martins, Goldberg, Joanna B.
Publicado em 2014

Differential diagnosis in ulcerative colitis in an adolescent: Chronic granulomatous disease needs extra attention

Por Kotlarz, Daniel, Egritas Gurkan, Odul, Haskologlu, Zehra Sule, Ekinci, Ozgur, Aksu Unlusoy, Aysel, Gürcan Kaya, Neslihan, Puchalka, Jacek, Klein, Cristoph, Dalgic, Buket
Publicado no World J Gastrointest Pathophysiol (2017)

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

Por Puchałka, Jacek, Oberhardt, Matthew A., Godinho, Miguel, Bielecka, Agata, Regenhardt, Daniela, Timmis, Kenneth N., Papin, Jason A., Martins dos Santos, Vítor A. P.
Publicado em 2008

Absence of IFN-β impairs antigen presentation capacity of splenic dendritic cells via down-regulation of Hsp70

Por Ziętara, Natalia, Łyszkiewicz, Marcin, Gekara, Nelson, Puchałka, Jacek, Martins Dos Santos, Vitor A.P., Hunt, Clayton R., Pandita, Tej K., Lienenklaus, Stefan, Weiss, Siegfried
Publicado em 2009

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics app...

Por Poblete-Castro, Ignacio, Escapa, Isabel F, Jäger, Christian, Puchalka, Jacek, Chi Lam, Carolyn Ming, Schomburg, Dietmar, Prieto, María Auxiliadora, Martins dos Santos, Vítor AP
Publicado em 2012

In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs

Por Bielecki, Piotr, Puchałka, Jacek, Wos-Oxley, Melissa L., Loessner, Holger, Glik, Justyna, Kawecki, Marek, Nowak, Mariusz, Tümmler, Burkhard, Weiss, Siegfried, dos Santos, Vítor A. P. Martins
Publicado em 2011

Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing

Por Rossmann, Friederike S., Racek, Tomas, Wobser, Dominique, Puchalka, Jacek, Rabener, Elaine M., Reiger, Matthias, Hendrickx, Antoni P. A., Diederich, Ann-Kristin, Jung, Kirsten, Klein, Christoph, Huebner, Johannes
Publicado no PLoS Pathog (2015)

Immunoglobulins drive terminal maturation of splenic dendritic cells

Por Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Pei, Gang, Gutierrez, Maximiliano Gabriel, Lienenklaus, Stefan, Hobeika, Elias, Reth, Michael, Martins dos Santos, Vitor A. P., Krueger, Andreas, Weiss, Siegfried
Publicado em 2013

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling

Por Wodke, Judith A H, Puchałka, Jacek, Lluch-Senar, Maria, Marcos, Josep, Yus, Eva, Godinho, Miguel, Gutiérrez-Gallego, Ricardo, dos Santos, Vitor A P Martins, Serrano, Luis, Klipp, Edda, Maier, Tobias
Publicado em 2013

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies

Por Ballerstedt, Hendrik, Volkers, Rita J. M., Mars, Astrid E., Hallsworth, John E., Santos, Vitor A. Martins dos, Puchalka, Jaçek, van Duuren, Joost, Eggink, Gerrit, Timmis, Ken N., de Bont, Jan A. M., Wery, Jan
Publicado em 2007

miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity

Por Łyszkiewicz, Marcin, Winter, Samantha J., Witzlau, Katrin, Föhse, Lisa, Brownlie, Rebecca, Puchałka, Jacek, Verheyden, Nikita A., Kunze-Schumacher, Heike, Imelmann, Esther, Blume, Jonas, Raha, Solaiman, Sekiya, Takashi, Yoshimura, Akihiko, Frueh, Jochen T., Ullrich, Evelyn, Huehn, Jochen, Weiss, Siegfried, Gutierrez, Maximiliano G., Prinz, Immo, Zamoyska, Rose, Ziętara, Natalia, Krueger, Andreas
Publicado no PLoS Biol (2019)

Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

Por Varga, John J., Barbier, Mariette, Mulet, Xavier, Bielecki, Piotr, Bartell, Jennifer A., Owings, Joshua P., Martinez-Ramos, Inmaculada, Hittle, Lauren E., Davis, Michael R., Damron, F. Heath, Liechti, George W., Puchałka, Jacek, dos Santos, Vitor A. P. Martins, Ernst, Robert K., Papin, Jason A., Albertí, Sebastian, Oliver, Antonio, Goldberg, Joanna B.
Publicado no BMC Genomics (2015)

Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells

Por Łyszkiewicz, Marcin, Ziętara, Natalia, Frey, Laura, Pannicke, Ulrich, Stern, Marcel, Liu, Yanshan, Fan, Yanxin, Puchałka, Jacek, Hollizeck, Sebastian, Somekh, Ido, Rohlfs, Meino, Yilmaz, Tuğba, Ünal, Ekrem, Karakukcu, Musa, Patiroğlu, Türkan, Kellerer, Christina, Karasu, Ebru, Sykora, Karl-Walter, Lev, Atar, Simon, Amos, Somech, Raz, Roesler, Joachim, Hoenig, Manfred, Keppler, Oliver T., Schwarz, Klaus, Klein, Christoph
Publicado no Nat Commun (2020)