Bridging the Gap between Stochastic and Deterministic Regimes in the Kinetic Simulations of the Biochemical Reaction Networks

ανά Puchałka, Jacek, Kierzek, Andrzej M.
Έκδοση 2004

Novel Spontaneous Deletion of Artemis Exons 10 and 11 in Mice Leads to T- and B-Cell Deficiency

ανά Barthels, Christian, Puchałka, Jacek, Racek, Tomas, Klein, Christoph, Brocker, Thomas
Έκδοση 2013

Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis

ανά Oberhardt, Matthew A., Puchałka, Jacek, Martins dos Santos, Vítor A. P., Papin, Jason A.
Έκδοση 2011

Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida

ανά Kremling, Andreas, Pflüger-Grau, Katharina, Chavarría, Max, Puchalka, Jacek, dos Santos, Vitor Martins, Lorenzo, Víctor de
Έκδοση 2012

Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1

ανά Oberhardt, Matthew A., Puchałka, Jacek, Fryer, Kimberly E., Martins dos Santos, Vítor A. P., Papin, Jason A.
Έκδοση 2008

Multicongenic fate mapping quantification of dynamics of thymus colonization

ανά Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Witzlau, Katrin, Reinhardt, Annika, Förster, Reinhold, Pabst, Oliver, Prinz, Immo, Krueger, Andreas
Τόπος έκδοσης J Exp Med (2015)

Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition

ανά van Duuren, Jozef BJH, Puchałka, Jacek, Mars, Astrid E, Bücker, René, Eggink, Gerrit, Wittmann, Christoph, dos Santos, Vítor AP Martins
Έκδοση 2013

From the Environment to the Host: Re-Wiring of the Transcriptome of Pseudomonas aeruginosa from 22°C to 37°C

ανά Barbier, Mariette, Damron, F. Heath, Bielecki, Piotr, Suárez-Diez, María, Puchałka, Jacek, Albertí, Sebastian, dos Santos, Vitor Martins, Goldberg, Joanna B.
Έκδοση 2014

Differential diagnosis in ulcerative colitis in an adolescent: Chronic granulomatous disease needs extra attention

ανά Kotlarz, Daniel, Egritas Gurkan, Odul, Haskologlu, Zehra Sule, Ekinci, Ozgur, Aksu Unlusoy, Aysel, Gürcan Kaya, Neslihan, Puchalka, Jacek, Klein, Cristoph, Dalgic, Buket
Τόπος έκδοσης World J Gastrointest Pathophysiol (2017)

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

ανά Puchałka, Jacek, Oberhardt, Matthew A., Godinho, Miguel, Bielecka, Agata, Regenhardt, Daniela, Timmis, Kenneth N., Papin, Jason A., Martins dos Santos, Vítor A. P.
Έκδοση 2008

Absence of IFN-β impairs antigen presentation capacity of splenic dendritic cells via down-regulation of Hsp70

ανά Ziętara, Natalia, Łyszkiewicz, Marcin, Gekara, Nelson, Puchałka, Jacek, Martins Dos Santos, Vitor A.P., Hunt, Clayton R., Pandita, Tej K., Lienenklaus, Stefan, Weiss, Siegfried
Έκδοση 2009

The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics app...

ανά Poblete-Castro, Ignacio, Escapa, Isabel F, Jäger, Christian, Puchalka, Jacek, Chi Lam, Carolyn Ming, Schomburg, Dietmar, Prieto, María Auxiliadora, Martins dos Santos, Vítor AP
Έκδοση 2012

In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs

ανά Bielecki, Piotr, Puchałka, Jacek, Wos-Oxley, Melissa L., Loessner, Holger, Glik, Justyna, Kawecki, Marek, Nowak, Mariusz, Tümmler, Burkhard, Weiss, Siegfried, dos Santos, Vítor A. P. Martins
Έκδοση 2011

Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing

ανά Rossmann, Friederike S., Racek, Tomas, Wobser, Dominique, Puchalka, Jacek, Rabener, Elaine M., Reiger, Matthias, Hendrickx, Antoni P. A., Diederich, Ann-Kristin, Jung, Kirsten, Klein, Christoph, Huebner, Johannes
Τόπος έκδοσης PLoS Pathog (2015)

Immunoglobulins drive terminal maturation of splenic dendritic cells

ανά Ziętara, Natalia, Łyszkiewicz, Marcin, Puchałka, Jacek, Pei, Gang, Gutierrez, Maximiliano Gabriel, Lienenklaus, Stefan, Hobeika, Elias, Reth, Michael, Martins dos Santos, Vitor A. P., Krueger, Andreas, Weiss, Siegfried
Έκδοση 2013

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling

ανά Wodke, Judith A H, Puchałka, Jacek, Lluch-Senar, Maria, Marcos, Josep, Yus, Eva, Godinho, Miguel, Gutiérrez-Gallego, Ricardo, dos Santos, Vitor A P Martins, Serrano, Luis, Klipp, Edda, Maier, Tobias
Έκδοση 2013

Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies

ανά Ballerstedt, Hendrik, Volkers, Rita J. M., Mars, Astrid E., Hallsworth, John E., Santos, Vitor A. Martins dos, Puchalka, Jaçek, van Duuren, Joost, Eggink, Gerrit, Timmis, Ken N., de Bont, Jan A. M., Wery, Jan
Έκδοση 2007

miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity

ανά Łyszkiewicz, Marcin, Winter, Samantha J., Witzlau, Katrin, Föhse, Lisa, Brownlie, Rebecca, Puchałka, Jacek, Verheyden, Nikita A., Kunze-Schumacher, Heike, Imelmann, Esther, Blume, Jonas, Raha, Solaiman, Sekiya, Takashi, Yoshimura, Akihiko, Frueh, Jochen T., Ullrich, Evelyn, Huehn, Jochen, Weiss, Siegfried, Gutierrez, Maximiliano G., Prinz, Immo, Zamoyska, Rose, Ziętara, Natalia, Krueger, Andreas
Τόπος έκδοσης PLoS Biol (2019)

Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

ανά Varga, John J., Barbier, Mariette, Mulet, Xavier, Bielecki, Piotr, Bartell, Jennifer A., Owings, Joshua P., Martinez-Ramos, Inmaculada, Hittle, Lauren E., Davis, Michael R., Damron, F. Heath, Liechti, George W., Puchałka, Jacek, dos Santos, Vitor A. P. Martins, Ernst, Robert K., Papin, Jason A., Albertí, Sebastian, Oliver, Antonio, Goldberg, Joanna B.
Τόπος έκδοσης BMC Genomics (2015)

Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells

ανά Łyszkiewicz, Marcin, Ziętara, Natalia, Frey, Laura, Pannicke, Ulrich, Stern, Marcel, Liu, Yanshan, Fan, Yanxin, Puchałka, Jacek, Hollizeck, Sebastian, Somekh, Ido, Rohlfs, Meino, Yilmaz, Tuğba, Ünal, Ekrem, Karakukcu, Musa, Patiroğlu, Türkan, Kellerer, Christina, Karasu, Ebru, Sykora, Karl-Walter, Lev, Atar, Simon, Amos, Somech, Raz, Roesler, Joachim, Hoenig, Manfred, Keppler, Oliver T., Schwarz, Klaus, Klein, Christoph
Τόπος έκδοσης Nat Commun (2020)