An accurate paired sample test for count data

Por Pham, Thang V., Jimenez, Connie R.
Publicado em 2012

iq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics

Por Pham, Thang V, Henneman, Alex A, Jimenez, Connie R
Publicado no Bioinformatics (2020)

Prediction of outcome of non-small cell lung cancer patients treated with chemotherapy and bortezomib by time-course MALDI-TOF-MS serum peptide profiling

Por Voortman, Johannes, Pham, Thang V, Knol, Jaco C, Giaccone, Giuseppe, Jimenez, Connie R
Publicado em 2009

Mass Spectrometry-Based Serum and Plasma Peptidome Profiling for Prediction of Treatment Outcome in Patients With Solid Malignancies

Por Labots, Mariette, Schütte, Lisette M., van der Mijn, Johannes C., Pham, Thang V., Jiménez, Connie R., Verheul, Henk M.W.
Publicado em 2014

Proteomic Profiling of Mycobacterium tuberculosis Identifies Nutrient-starvation-responsive Toxin–antitoxin Systems

Por Albrethsen, Jakob, Agner, Jeppe, Piersma, Sander R., Højrup, Peter, Pham, Thang V., Weldingh, Karin, Jimenez, Connie R., Andersen, Peter, Rosenkrands, Ida
Publicado em 2013

Feasibility of urinary extracellular vesicle proteome profiling using a robust and simple, clinically applicable isolation method

Por Bijnsdorp, Irene V., Maxouri, Olga, Kardar, Aarzo, Schelfhorst, Tim, Piersma, Sander R., Pham, Thang V., Vis, Andre, van Moorselaar, R. Jeroen, Jimenez, Connie R.
Publicado no J Extracell Vesicles (2017)

Colorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture

Por Rajcevic, Uros, Knol, Jaco C, Piersma, Sander, Bougnaud, Sébastien, Fack, Fred, Sundlisaeter, Eirik, Søndenaa, Karl, Myklebust, Reidar, Pham, Thang V, Niclou, Simone P, Jiménez, Connie R
Publicado em 2014

Comparative protein profiling reveals minichromosome maintenance (MCM) proteins as novel potential tumor markers for meningiomas

Por Saydam, Okay, Senol, Ozlem, Schaaij-Visser, Tieneke B.M., Pham, Thang V., Piersma, Sander R., Stemmer-Rachamimov, Anat O., Würdinger, Thomas, Peerdeman, Saskia M., Jimenez, Connie R.
Publicado em 2010

Proteomics of Mouse BRCA1-deficient Mammary Tumors Identifies DNA Repair Proteins with Potential Diagnostic and Prognostic Value in Human Breast Cancer

Por Warmoes, Marc, Jaspers, Janneke E., Pham, Thang V., Piersma, Sander R., Oudgenoeg, Gideon, Massink, Maarten P. G., Waisfisz, Quinten, Rottenberg, Sven, Boven, Epie, Jonkers, Jos, Jimenez, Connie R.
Publicado em 2012

Proteomics of Genetically Engineered Mouse Mammary Tumors Identifies Fatty Acid Metabolism Members as Potential Predictive Markers for Cisplatin Resistance

Por Warmoes, Marc, Jaspers, Janneke E., Xu, Guotai, Sampadi, Bharath K., Pham, Thang V., Knol, Jaco C., Piersma, Sander R., Boven, Epie, Jonkers, Jos, Rottenberg, Sven, Jimenez, Connie R.
Publicado em 2013

MicroRNA-124 and -137 cooperativity controls caspase-3 activity through BCL2L13 in hippocampal neural stem cells

Por Schouten, Marijn, Fratantoni, Silvina A., Hubens, Chantal J., Piersma, Sander R., Pham, Thang V., Bielefeld, Pascal, Voskuyl, Rob A., Lucassen, Paul J., Jimenez, Connie R., Fitzsimons, Carlos P.
Publicado no Sci Rep (2015)

Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus

Por Schouten, Marijn, Bielefeld, Pascal, Fratantoni, Silvina A., Hubens, Chantal J., Piersma, Sander R., Pham, Thang V., Voskuyl, Rob A., Lucassen, Paul J., Jimenez, Connie R., Fitzsimons, Carlos P.
Publicado no Sci Data (2016)

Peptide-mediated ‘miniprep’ isolation of extracellular vesicles is suitable for high-throughput proteomics

Por Knol, Jaco C., de Reus, Inge, Schelfhorst, Tim, Beekhof, Robin, de Wit, Meike, Piersma, Sander R., Pham, Thang V., Smit, Egbert F., Verheul, Henk M.W., Jiménez, Connie R.
Publicado no EuPA Open Proteom (2016)

Proteomic Analysis of miR-195 and miR-497 Replacement Reveals Potential Candidates that Increase Sensitivity to Oxaliplatin in MSI/P53wt Colorectal Cancer Cells

Por Poel, Dennis, Boyd, Lenka N.C., Beekhof, Robin, Schelfhorst, Tim, Pham, Thang V., Piersma, Sander R., Knol, Jaco C., Jimenez, Connie R., Verheul, Henk M.W., Buffart, Tineke E.
Publicado no Cells (2019)

Tumor Heterogeneity Underlies Differential Cisplatin Sensitivity in Mouse Models of Small-Cell Lung Cancer

Por Böttger, Franziska, Semenova, Ekaterina A., Song, Ji-Ying, Ferone, Giustina, van der Vliet, Jan, Cozijnsen, Miranda, Bhaskaran, Rajith, Bombardelli, Lorenzo, Piersma, Sander R., Pham, Thang V., Jimenez, Connie R., Berns, Anton
Publicado no Cell Rep (2019)

Subnuclear Proteomics in Colorectal Cancer: IDENTIFICATION OF PROTEINS ENRICHED IN THE NUCLEAR MATRIX FRACTION AND REGULATION IN ADENOMA TO CARCINOMA PROGRESSION

Por Albrethsen, Jakob, Knol, Jaco C., Piersma, Sander R., Pham, Thang V., de Wit, Meike, Mongera, Sandra, Carvalho, Beatriz, Verheul, Henk M. W., Fijneman, Remond J. A., Meijer, Gerrit A., Jimenez, Connie R.
Publicado em 2010

Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles

Por Steenbeek, Sander C, Pham, Thang V, de Ligt, Joep, Zomer, Anoek, Knol, Jaco C, Piersma, Sander R, Schelfhorst, Tim, Huisjes, Rick, Schiffelers, Raymond M, Cuppen, Edwin, Jimenez, Connie R, van Rheenen, Jacco
Publicado no EMBO J (2018)

Selection of Protein Kinase Inhibitors Based on Tumor Tissue Kinase Activity Profiles in Patients with Refractory Solid Malignancies: An Interventional Molecular Profiling Study

Por Labots, Mariette, Van der Mijn, Johannes C., Dekker, Henk, Ruijter, Rita, Pham, Thang V., Van der Vliet, Hans J., Van der Hoeven, Jacobus J.M., Meijer, Gerrit A., Verheul, Henk M.W.
Publicado no Oncologist (2018)

Human Testis Phosphoproteome Reveals Kinases as Potential Targets in Spermatogenesis and Testicular Cancer

Por Castillo, Judit, Knol, Jaco C., Korver, Cindy M., Piersma, Sander R., Pham, Thang V., de Goeij-de Haas, Richard R., van Pelt, Ans M.M., Jimenez, Connie R., Jansen, Bastiaan J.H.
Publicado no Mol Cell Proteomics (2019)

iTRAQ-based Proteomics Profiling Reveals Increased Metabolic Activity and Cellular Cross-talk in Angiogenic Compared with Invasive Glioblastoma Phenotype

Por Rajcevic, Uros, Petersen, Kjell, Knol, Jaco C., Loos, Maarten, Bougnaud, Sébastien, Klychnikov, Oleg, Li, Ka Wan, Pham, Thang V., Wang, Jian, Miletic, Hrvoje, Peng, Zhao, Bjerkvig, Rolf, Jimenez, Connie R., Niclou, Simone P.
Publicado em 2009