A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase

por Da, Lin-Tai, Pardo Avila, Fátima, Wang, Dong, Huang, Xuhui
Publicado 2013

Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes

por Zhang, Lu, Silva, Daniel-Adriano, Pardo-Avila, Fátima, Wang, Dong, Huang, Xuhui
Publicado en PLoS Comput Biol (2015)

8-Oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase II

por Konovalov, Kirill A., Pardo-Avila, Fátima, Tse, Carmen Ka Man, Oh, Juntaek, Wang, Dong, Huang, Xuhui
Publicado en J Biol Chem (2019)

Millisecond dynamics of RNA polymerase II translocation at atomic resolution

por Silva, Daniel-Adriano, Weiss, Dahlia R., Pardo Avila, Fátima, Da, Lin-Tai, Levitt, Michael, Wang, Dong, Huang, Xuhui
Publicado 2014

Elucidation of the Dynamics of Transcription Elongation by RNA Polymerase II using Kinetic Network Models

por ZHANG, LU, PARDO-AVILA, FÁTIMA, UNARTA, ILONA CHRISTY, CHEUNG, PETER PAK-HANG, WANG, GUO, WANG, DONG, HUANG, XUHUI
Publicado en Acc Chem Res (2016)

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding

por Kudva, Renuka, Tian, Pengfei, Pardo-Avila, Fátima, Carroni, Marta, Best, Robert B, Bernstein, Harris D, von Heijne, Gunnar
Publicado en eLife (2018)

Bridge helix bending promotes RNA polymerase II backtracking through a critical and conserved threonine residue

por Da, Lin-Tai, Pardo-Avila, Fátima, Xu, Liang, Silva, Daniel-Adriano, Zhang, Lu, Gao, Xin, Wang, Dong, Huang, Xuhui
Publicado en Nat Commun (2016)

Comprehensive computational design of ordered peptide macrocycles

por Hosseinzadeh, Parisa, Bhardwaj, Gaurav, Mulligan, Vikram Khipple, Shortridge, Matthew D., Craven, Timothy W., Pardo-Avila, Fátima, Rettie, Stephen A., Kim, David E., Silva, Daniel-Adriano, Ibrahim, Yehia M., Webb, Ian K., Cort, John R., Adkins, Joshua N., Varani, Gabriele, Baker, David
Publicado en Science (2017)

Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites

por Hosseinzadeh, Parisa, Watson, Paris R., Craven, Timothy W., Li, Xinting, Rettie, Stephen, Pardo-Avila, Fátima, Bera, Asim K., Mulligan, Vikram Khipple, Lu, Peilong, Ford, Alexander S., Weitzner, Brian D., Stewart, Lance J., Moyer, Adam P., Di Piazza, Maddalena, Whalen, Joshua G., Greisen, Per Jr., Christianson, David W., Baker, David
Publicado en Nat Commun (2021)

Structure of the 30S ribosomal decoding complex at ambient temperature

por Dao, E. Han, Poitevin, Frédéric, Sierra, Raymond G., Gati, Cornelius, Rao, Yashas, Ciftci, Halil Ibrahim, Akşit, Fulya, McGurk, Alex, Obrinski, Trevor, Mgbam, Paul, Hayes, Brandon, De Lichtenberg, Casper, Pardo-Avila, Fatima, Corsepius, Nicholas, Zhang, Lindsey, Seaberg, Matthew H., Hunter, Mark S., Liang, Mengling, Koglin, Jason E., Wakatsuki, Soichi, Demirci, Hasan
Publicado en RNA (2018)

Aminoglycoside ribosome interactions reveal novel conformational states at ambient temperature

por O’Sullivan, Mary E, Poitevin, Frédéric, Sierra, Raymond G, Gati, Cornelius, Dao, E Han, Rao, Yashas, Aksit, Fulya, Ciftci, Halilibrahim, Corsepius, Nicholas, Greenhouse, Robert, Hayes, Brandon, Hunter, Mark S, Liang, Mengling, McGurk, Alex, Mbgam, Paul, Obrinsky, Trevor, Pardo-Avila, Fátima, Seaberg, Matthew H, Cheng, Alan G, Ricci, Anthony J, DeMirci, Hasan
Publicado en Nucleic Acids Res (2018)

De novo design of potent and selective mimics of IL-2 and IL-15

por Silva, Daniel-Adriano, Yu, Shawn, Ulge, Umut, Spangler, Jamie B., Jude, Kevin M., Labão-Almeida, Carlos, Ali, Lestat R., Quijano-Rubio, Alfredo, Ruterbusch, Mikel, Leung, Isabel, Biary, Tamara, Crowley, Stephanie J., Marcos, Enrique, Walkey, Carl D., Weitzner, Brian D., Pardo-Avila, Fátima, Castellanos, Javier, Carter, Lauren, Stewart, Lance, Riddell, Stanley, Pepper, Marion, Bernardes, Gonçalo J. L., Dougan, Michael, Garcia, K. Christopher, Baker, David
Publicado en Nature (2019)