Unsupervised speech recognition through spike-timing-dependent plasticity in a convolutional spiking neural network

gan Dong, Meng, Huang, Xuhui, Xu, Bo
Cyhoeddwyd yn PLoS One (2018)

Using generalized ensemble simulations and Markov state models to identify conformational states

gan Bowman, Gregory R., Huang, Xuhui, Pande, Vijay S.
Cyhoeddwyd 2009

Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environment

gan Huang, Xuhui, Bowman, Gregory R., Pande, Vijay S.
Cyhoeddwyd 2008

Dynamics of Pyrophosphate Ion Release and Its Coupled Trigger Loop Motion from Closed to Open State in RNA Polymerase II

gan Da, Lin-Tai, Wang, Dong, Huang, Xuhui
Cyhoeddwyd 2012

Quantitative comparison of alternative methods for coarse-graining biological networks

gan Bowman, Gregory R., Meng, Luming, Huang, Xuhui
Cyhoeddwyd 2013

Network models for molecular kinetics and their initial applications to human health

gan Bowman, Gregory R, Huang, Xuhui, Pande, Vijay S
Cyhoeddwyd yn Cell Res (2010)

Conformational selection turns on phenylalanine hydroxylase

gan Konovalov, Kirill A., Wang, Wei, Huang, Xuhui
Cyhoeddwyd yn J Biol Chem (2018)

Multi-Scale Expressions of One Optimal State Regulated by Dopamine in the Prefrontal Cortex

gan Hu, Guyue, Huang, Xuhui, Jiang, Tianzi, Yu, Shan
Cyhoeddwyd yn Front Physiol (2019)

Rapid equilibrium sampling initiated from nonequilibrium data

gan Huang, Xuhui, Bowman, Gregory R., Bacallado, Sergio, Pande, Vijay S.
Cyhoeddwyd 2009

X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct

gan Wang, Dong, Zhu, Guangyu, Huang, Xuhui, Lippard, Stephen J.
Cyhoeddwyd 2010

Hydrophobic Aided Replica Exchange: an Efficient Algorithm for Protein Folding in Explicit Solvent

gan Liu, Pu, Huang, Xuhui, Zhou, Ruhong, Berne, B. J.
Cyhoeddwyd 2006

Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation

gan Bernauer, Julie, Huang, Xuhui, Sim, Adelene Y.L., Levitt, Michael
Cyhoeddwyd 2011

A Two-State Model for the Dynamics of the Pyrophosphate Ion Release in Bacterial RNA Polymerase

gan Da, Lin-Tai, Pardo Avila, Fátima, Wang, Dong, Huang, Xuhui
Cyhoeddwyd 2013

Crystallographic Snapshots of Class A β-Lactamase Catalysis Reveal Structural Changes That Facilitate β-Lactam Hydrolysis

gan Pan, Xuehua, He, Yunjiao, Lei, Jinping, Huang, Xuhui, Zhao, Yanxiang
Cyhoeddwyd yn J Biol Chem (2017)

Weak Higher-Order Interactions in Macroscopic Functional Networks of the Resting Brain

gan Huang, Xuhui, Xu, Kaibin, Chu, Congying, Jiang, Tianzi, Yu, Shan
Cyhoeddwyd yn J Neurosci (2017)

The hydrolytic water molecule of Class A β-lactamase relies on the acyl-enzyme intermediate ES* for proper coordination and catalysis

gan He, Yunjiao, Lei, Jinping, Pan, Xuehua, Huang, Xuhui, Zhao, Yanxiang
Cyhoeddwyd yn Sci Rep (2020)

Nanoscale Dewetting Transition in Protein Complex Folding

gan Hua, Lan, Huang, Xuhui, Liu, Pu, Zhou, Ruhong, Berne, Bruce J.
Cyhoeddwyd 2007

A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein

gan Silva, Daniel-Adriano, Bowman, Gregory R., Sosa-Peinado, Alejandro, Huang, Xuhui
Cyhoeddwyd 2011

Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis

gan Gu, Shuo, Silva, Daniel-Adriano, Meng, Luming, Yue, Alexander, Huang, Xuhui
Cyhoeddwyd 2014

Chaotic Motifs in Gene Regulatory Networks

gan Zhang, Zhaoyang, Ye, Weiming, Qian, Yu, Zheng, Zhigang, Huang, Xuhui, Hu, Gang
Cyhoeddwyd 2012