Scalable Genomics with R and Bioconductor

av Lawrence, Michael, Morgan, Martin
I publikationen Stat Sci (2014)

Explaining phenotypic selection on plant attractive characters: male function, gender balance or ecological context?

av Ashman, Tia-Lynn, Morgan, Martin T.
Publicerad 2004

The Bioconductor channel in F1000Research

av Huber, Wolfgang, Carey, Vincent, Davis, Sean, Hansen, Kasper Daniel, Morgan, Martin
I publikationen F1000Res (2016)

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

av Morgan, Martin, Anders, Simon, Lawrence, Michael, Aboyoun, Patrick, Pagès, Hervé, Gentleman, Robert
Publicerad 2009

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants

av Obenchain, Valerie, Lawrence, Michael, Carey, Vincent, Gogarten, Stephanie, Shannon, Paul, Morgan, Martin
Publicerad 2014

Genomic Differences Between Estrogen Receptor (ER)-Positive and ER-Negative Human Breast Carcinoma Identified by Single Nucleotide Polymorphism Array Comparative Genome Hybridizati...

av Fang, Min, Toher, Jessica, Morgan, Martin, Davison, Jerry, Tannenbaum, Susan, Claffey, Kevin
I publikationen Cancer (2010)

Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data

av Oh, Sehyun, Geistlinger, Ludwig, Ramos, Marcel, Morgan, Martin, Waldron, Levi, Riester, Markus
I publikationen JCO Clin Cancer Inform (2020)

BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem

av Su, Shian, Carey, Vincent J., Shepherd, Lori, Ritchie, Matthew, Morgan, Martin T., Davis, Sean
I publikationen F1000Res (2019)

Recent Genetic Selection in the Ancestral Admixture of Puerto Ricans

av Tang, Hua , Choudhry, Shweta , Mei, Rui , Morgan, Martin , Rodriguez-Cintron, William , Burchard, Esteban González , Risch, Neil J. 
Publicerad 2007

Response to Price et al.

av Tang, Hua, Choudhry, Shweta, Mei, Rui, Morgan, Martin, Rodriguez-Cintron, William, Burchard, Esteban Gonzalez, Risch, Neil J.
Publicerad 2008

Software for Computing and Annotating Genomic Ranges

av Lawrence, Michael, Huber, Wolfgang, Pagès, Hervé, Aboyoun, Patrick, Carlson, Marc, Gentleman, Robert, Morgan, Martin T., Carey, Vincent J.
Publicerad 2013

Orchestrating a community-developed computational workshop and accompanying training materials

av Davis, Sean, Ramos, Marcel, Shepherd, Lori, Turaga, Nitesh, Geistlinger, Ludwig, Morgan, Martin T., Haibe-Kains, Benjamin, Waldron, Levi
I publikationen F1000Res (2018)

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor

av Gopaulakrishnan, Shweta, Pollack, Samuela, Stubbs, BJ, Pagès, Hervé, Readey, John, Davis, Sean, Waldron, Levi, Morgan, Martin, Carey, Vincent
I publikationen F1000Res (2019)

Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale

av Carey, Vincent J., Ramos, Marcel, Stubbs, Benjamin J., Gopaulakrishnan, Shweta, Oh, Sehyun, Turaga, Nitesh, Waldron, Levi, Morgan, Martin
I publikationen JCO Clin Cancer Inform (2020)

gwasurvivr: an R package for genome-wide survival analysis

av Rizvi, Abbas A, Karaesmen, Ezgi, Morgan, Martin, Preus, Leah, Wang, Junke, Sovic, Michael, Hahn, Theresa, Sucheston-Campbell, Lara E
I publikationen Bioinformatics (2018)

Metabolic Signatures of Bacterial Vaginosis

av Srinivasan, Sujatha, Morgan, Martin T., Fiedler, Tina L., Djukovic, Danijel, Hoffman, Noah G., Raftery, Daniel, Marrazzo, Jeanne M., Fredricks, David N.
I publikationen mBio (2015)

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

av Love, Michael I., Soneson, Charlotte, Hickey, Peter F., Johnson, Lisa K., Pierce, N. Tessa, Shepherd, Lori, Morgan, Martin, Patro, Rob
I publikationen PLoS Comput Biol (2020)

MYC-driven tumorigenesis is inhibited by WRN syndrome gene deficiency

av Moser, Russell, Toyoshima, Masafumi, Robinson, Kristin, Gurley, Kay E., Howie, Heather L., Davison, Jerry, Morgan, Martin, Kemp, Christopher J., Grandori, Carla
Publicerad 2012

More Than Meets the Eye: Associations of Vaginal Bacteria with Gram Stain Morphotypes Using Molecular Phylogenetic Analysis

av Srinivasan, Sujatha, Morgan, Martin T., Liu, Congzhou, Matsen, Frederick A., Hoffman, Noah G., Fiedler, Tina L., Agnew, Kathy J., Marrazzo, Jeanne M., Fredricks, David N.
Publicerad 2013

Multiomic Integration of Public Oncology Databases in Bioconductor

av Ramos, Marcel, Geistlinger, Ludwig, Oh, Sehyun, Schiffer, Lucas, Azhar, Rimsha, Kodali, Hanish, de Bruijn, Ino, Gao, Jianjiong, Carey, Vincent J., Morgan, Martin, Waldron, Levi
I publikationen JCO Clin Cancer Inform (2020)