Logic modeling and the ridiculome under the rug

Por Blinov Michael L, Moraru Ion I
Publicado em 2012-11-01

XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes

Por Blinov, Michael L., Moraru, Ion I.
Publicado em 2007

Leveraging Modeling Approaches: Reaction Networks and Rules

Por Blinov, Michael L., Moraru, Ion I.
Publicado em 2012

Logic modeling and the ridiculome under the rug

Por Blinov, Michael L, Moraru, Ion I
Publicado em 2012

Complexity and Modularity of Intracellular Networks - A Systematic Approach for Modeling and Simulation

Por Blinov, Michael L., Ruebenacker, Oliver, Moraru, Ion I.
Publicado em 2008

Kinetic Modeling using BioPAX ontology

Por Ruebenacker, Oliver, Moraru, Ion. I., Schaff, James C., Blinov, Michael L.
Publicado em 2007

Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling

Por Brown, Sherry-Ann, Moraru, Ion I., Schaff, James C., Loew, Leslie M.
Publicado em 2011

Phosphorylation state-dependent interaction between AKAP7δ/γ and phospholamban increases phospholamban phosphorylation

Por Rigatti, Marc, Le, Andrew V., Gerber, Claire, Moraru, Ion I., Dodge-Kafka, Kimberly L.
Publicado no Cell Signal (2015)

Rule-based modeling with Virtual Cell

Por Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Loew, Leslie M., Blinov, Michael L.
Publicado no Bioinformatics (2016)

Morphological Control of Inositol-1,4,5-Trisphosphate–Dependent Signals

Por Fink, Charles C., Slepchenko, Boris, Moraru, Ion I., Schaff, James, Watras, James, Loew, Leslie M.
Publicado em 1999

Spatial Modeling of Cell Signaling Networks

Por Cowan, Ann E., Moraru, Ion I., Schaff, James C., Slepchenko, Boris M., Loew, Leslie M.
Publicado em 2012

Analysis of AKAP7γ Dimerization

Por Singh, Arpita, Rigatti, Marc, Le, Andrew V., Carlson, Cathrine R., Moraru, Ion I., Dodge-Kafka, Kimberly L.
Publicado no J Signal Transduct (2015)

Compartmental and Spatial Rule-Based Modeling with Virtual Cell

Por Blinov, Michael L., Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Bloom, Judy E., Loew, Leslie M.
Publicado no Biophys J (2017)

Modeling and Analysis of Calcium Signaling Events Leading to Long-Term Depression in Cerebellar Purkinje Cells

Por Hernjak, Nicholas, Slepchenko, Boris M., Fernald, Kathleen, Fink, Charles C., Fortin, Dale, Moraru, Ion I., Watras, James, Loew, Leslie M.
Publicado em 2005

The Virtual Cell Modeling and Simulation Software Environment

Por Moraru, Ion I., Schaff, James C., Slepchenko, Boris M., Blinov, Michael, Morgan, Frank, Lakshminarayana, Anuradha, Gao, Fei, Li, Ye, Loew, Leslie M.
Publicado em 2008

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Por Waltemath, Dagmar, Adams, Richard, Bergmann, Frank T, Hucka, Michael, Kolpakov, Fedor, Miller, Andrew K, Moraru, Ion I, Nickerson, David, Sahle, Sven, Snoep, Jacky L, Le Novère, Nicolas
Publicado em 2011

Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling

Por Blinov, Michael L., Schaff, James C., Ruebenacker, Oliver, Wei, Xintao, Vasilescu, Dan, Gao, Fei, Morgan, Frank, Ye, Li, Lakshminarayana, Anuradha, Moraru, Ion I., Loew, Leslie M.
Publicado em 2014

NMRbox: A Resource for Biomolecular NMR Computation

Por Maciejewski, Mark W., Schuyler, Adam D., Gryk, Michael R., Moraru, Ion I., Romero, Pedro R., Ulrich, Eldon L., Eghbalnia, Hamid R., Livny, Miron, Delaglio, Frank, Hoch, Jeffrey C.
Publicado no Biophys J (2017)

Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks

Por Neves, Susana R., Tsokas, Panayiotis, Sarkar, Anamika, Grace, Elizabeth A., Rangamani, Padmini, Taubenfeld, Stephen M., Alberini, Cristina M., Schaff, James C., Blitzer, Robert D., Moraru, Ion I., Iyengar, Ravi
Publicado em 2008

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Por Waltemath, Dagmar, Bergmann, Frank T., Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Huaiyu, Moraru, Ion I., Myers, Chris J., Nickerson, David, Olivier, Brett G., Rodriguez, Nicolas, Schreiber, Falk, Smith, Lucian, Zhang, Fengkai, Bonnet, Eric
Publicado em 2014