Declarative Representation of Uncertainty in Mathematical Models

Por Miller, Andrew K., Britten, Randall D., Nielsen, Poul M. F.
Publicado em 2012

A Bayesian Search for Transcriptional Motifs

Por Miller, Andrew K., Print, Cristin G., Nielsen, Poul M. F., Crampin, Edmund J.
Publicado em 2010

An overview of the CellML API and its implementation

Por Miller, Andrew K, Marsh, Justin, Reeve, Adam, Garny, Alan, Britten, Randall, Halstead, Matt, Cooper, Jonathan, Nickerson, David P, Nielsen, Poul F
Publicado em 2010

FieldML, a proposed open standard for the Physiome project for mathematical model representation

Por Britten, Randall D., Christie, G. Richard, Little, Caton, Miller, Andrew K., Bradley, Chris, Wu, Alan, Yu, Tommy, Hunter, Peter, Nielsen, Poul
Publicado em 2013

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Por Waltemath, Dagmar, Adams, Richard, Bergmann, Frank T, Hucka, Michael, Kolpakov, Fedor, Miller, Andrew K, Moraru, Ion I, Nickerson, David, Sahle, Sven, Snoep, Jacky L, Le Novère, Nicolas
Publicado em 2011

Revision history aware repositories of computational models of biological systems

Por Miller, Andrew K, Yu, Tommy, Britten, Randall, Cooling, Mike T, Lawson, James, Cowan, Dougal, Garny, Alan, Halstead, Matt DB, Hunter, Peter J, Nickerson, David P, Nunns, Geo, Wimalaratne, Sarala M, F Nielsen, Poul M
Publicado em 2011

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

Por Bergmann, Frank T, Adams, Richard, Moodie, Stuart, Cooper, Jonathan, Glont, Mihai, Golebiewski, Martin, Hucka, Michael, Laibe, Camille, Miller, Andrew K, Nickerson, David P, Olivier, Brett G, Rodriguez, Nicolas, Sauro, Herbert M, Scharm, Martin, Soiland-Reyes, Stian, Waltemath, Dagmar, Yvon, Florent, Le Novère, Nicolas
Publicado no BMC Bioinformatics (2014)

Minimum Information About a Simulation Experiment (MIASE)

Por Waltemath, Dagmar, Adams, Richard, Beard, Daniel A., Bergmann, Frank T., Bhalla, Upinder S., Britten, Randall, Chelliah, Vijayalakshmi, Cooling, Michael T., Cooper, Jonathan, Crampin, Edmund J., Garny, Alan, Hoops, Stefan, Hucka, Michael, Hunter, Peter, Klipp, Edda, Laibe, Camille, Miller, Andrew K., Moraru, Ion, Nickerson, David, Nielsen, Poul, Nikolski, Macha, Sahle, Sven, Sauro, Herbert M., Schmidt, Henning, Snoep, Jacky L., Tolle, Dominic, Wolkenhauer, Olaf, Le Novère, Nicolas
Publicado em 2011