FAME, the Flux Analysis and Modeling Environment

Por Boele, Joost, Olivier, Brett G, Teusink, Bas
Publicado em 2012

StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes

Por Maarleveld, Timo R., Olivier, Brett G., Bruggeman, Frank J.
Publicado em 2013

Constraint-based stoichiometric modelling from single organisms to microbial communities

Por Gottstein, Willi, Olivier, Brett G., Bruggeman, Frank J., Teusink, Bas
Publicado no J R Soc Interface (2016)

Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks

Por Kelk, Steven M., Olivier, Brett G., Stougie, Leen, Bruggeman, Frank J.
Publicado em 2012

Interplay between Constraints, Objectives, and Optimality for Genome-Scale Stoichiometric Models

Por Maarleveld, Timo R., Wortel, Meike T., Olivier, Brett G., Teusink, Bas, Bruggeman, Frank J.
Publicado no PLoS Comput Biol (2015)

Basic concepts and principles of stoichiometric modeling of metabolic networks

Por Maarleveld, Timo R, Khandelwal, Ruchir A, Olivier, Brett G, Teusink, Bas, Bruggeman, Frank J
Publicado no Biotechnol J (2013)

Model-based quantification of metabolic interactions from dynamic microbial-community data

Por Hanemaaijer, Mark, Olivier, Brett G., Röling, Wilfred F. M., Bruggeman, Frank J., Teusink, Bas
Publicado no PLoS One (2017)

Community Flux Balance Analysis for Microbial Consortia at Balanced Growth

Por Khandelwal, Ruchir A., Olivier, Brett G., Röling, Wilfred F. M., Teusink, Bas, Bruggeman, Frank J.
Publicado em 2013

Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure

Por Hanemaaijer, Mark, Röling, Wilfred F. M., Olivier, Brett G., Khandelwal, Ruchir A., Teusink, Bas, Bruggeman, Frank J.
Publicado no Front Microbiol (2015)

Using a Genome-Scale Metabolic Model of Enterococcus faecalis V583 To Assess Amino Acid Uptake and Its Impact on Central Metabolism

Por Veith, Nadine, Solheim, Margrete, van Grinsven, Koen W. A., Olivier, Brett G., Levering, Jennifer, Grosseholz, Ruth, Hugenholtz, Jeroen, Holo, Helge, Nes, Ingolf, Teusink, Bas, Kummer, Ursula
Publicado no Appl Environ Microbiol (2015)

Top 10 metrics for life science software good practices

Por Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jimenez, Rafael C., Leskošek, Brane, Olivier, Brett G., Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel
Publicado no F1000Res (2016)

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project

Por Bergmann, Frank T, Adams, Richard, Moodie, Stuart, Cooper, Jonathan, Glont, Mihai, Golebiewski, Martin, Hucka, Michael, Laibe, Camille, Miller, Andrew K, Nickerson, David P, Olivier, Brett G, Rodriguez, Nicolas, Sauro, Herbert M, Scharm, Martin, Soiland-Reyes, Stian, Waltemath, Dagmar, Yvon, Florent, Le Novère, Nicolas
Publicado no BMC Bioinformatics (2014)

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Por Waltemath, Dagmar, Bergmann, Frank T., Chaouiya, Claudine, Czauderna, Tobias, Gleeson, Padraig, Goble, Carole, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Krebs, Olga, Le Novère, Nicolas, Mi, Huaiyu, Moraru, Ion I., Myers, Chris J., Nickerson, David, Olivier, Brett G., Rodriguez, Nicolas, Schreiber, Falk, Smith, Lucian, Zhang, Fengkai, Bonnet, Eric
Publicado em 2014