Model composition through model reduction: a combined model of CD95 and NF-κB signaling pathways

Por Kutumova, Elena, Zinovyev, Andrei, Sharipov, Ruslan, Kolpakov, Fedor
Publicado em 2013

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments

Por Yevshin, Ivan, Sharipov, Ruslan, Valeev, Tagir, Kel, Alexander, Kolpakov, Fedor
Publicado no Nucleic Acids Res (2017)

CYCLONET—an integrated database on cell cycle regulation and carcinogenesis

Por Kolpakov, Fedor, Poroikov, Vladimir, Sharipov, Ruslan, Kondrakhin, Yury, Zakharov, Alexey, Lagunin, Alexey, Milanesi, Luciano, Kel, Alexander
Publicado em 2007

Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activato...

Por Boyarskikh, Ulyana, Pintus, Sergey, Mandrik, Nikita, Stelmashenko, Daria, Kiselev, Ilya, Evshin, Ivan, Sharipov, Ruslan, Stegmaier, Philip, Kolpakov, Fedor, Filipenko, Maxim, Kel, Alexander
Publicado no BMC Med Genomics (2018)

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Por Waltemath, Dagmar, Adams, Richard, Bergmann, Frank T, Hucka, Michael, Kolpakov, Fedor, Miller, Andrew K, Moraru, Ion I, Nickerson, David, Sahle, Sven, Snoep, Jacky L, Le Novère, Nicolas
Publicado em 2011

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Por Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J.
Publicado no Nucleic Acids Res (2016)

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Por Kulakovskiy, Ivan V, Vorontsov, Ilya E, Yevshin, Ivan S, Sharipov, Ruslan N, Fedorova, Alla D, Rumynskiy, Eugene I, Medvedeva, Yulia A, Magana-Mora, Arturo, Bajic, Vladimir B, Papatsenko, Dmitry A, Kolpakov, Fedor A, Makeev, Vsevolod J
Publicado no Nucleic Acids Res (2018)