Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens

le Saeidi, Saman, McKain, Michael R., Kellogg, Elizabeth A.
Foilsithe in J Vis Exp (2018)

Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae

le Ramachandran, Dhanushya, McKain, Michael R., Kellogg, Elizabeth A., Hawkins, Jennifer S.
Foilsithe in G3 (Bethesda) (2020)

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes

le McKain, Michael R, Hartsock, Ryan H, Wohl, Molly M, Kellogg, Elizabeth A
Foilsithe in Bioinformatics (2017)

Practical considerations for plant phylogenomics

le McKain, Michael R., Johnson, Matthew G., Uribe‐Convers, Simon, Eaton, Deren, Yang, Ya
Foilsithe in Appl Plant Sci (2018)

Specimen-based analysis of morphology and the environment in ecologically dominant grasses: the power of the herbarium

le McAllister, Christine A., McKain, Michael R., Li, Mao, Bookout, Bess, Kellogg, Elizabeth A.
Foilsithe in Philos Trans R Soc Lond B Biol Sci (2019)

Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations

le Harrington, Andrew W., McKain, Michael R., Michalski, Daniel, Bauer, Kaylyn M., Daugherty, Joshua M., Steiniger, Mindy
Foilsithe in BMC Genomics (2017)

Reply to: Revisiting the origin of octoploid strawberry

le Edger, Patrick P., McKain, Michael R., Yocca, Alan E., Knapp, Steven J., Qiao, Qin, Zhang, Ticao
Foilsithe in Nat Genet (2019)

Ancient Polyploidy and Genome Evolution in Palms

le Barrett, Craig F, McKain, Michael R, Sinn, Brandon T, Ge, Xue-Jun, Zhang, Yuqu, Antonelli, Alexandre, Bacon, Christine D
Foilsithe in Genome Biol Evol (2019)

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae)

le Heyduk, Karolina, McAssey, Edward V., Grimwood, Jane, Shu, Shengqiang, Schmutz, Jeremy, McKain, Michael R., Leebens-Mack, Jim
Foilsithe in Front Plant Sci (2021)

The draft genome of the C(3) panicoid grass species Dichanthelium oligosanthes

le Studer, Anthony J., Schnable, James C., Weissmann, Sarit, Kolbe, Allison R., McKain, Michael R., Shao, Ying, Cousins, Asaph B., Kellogg, Elizabeth A., Brutnell, Thomas P.
Foilsithe in Genome Biol (2016)

Allopolyploidy, diversification, and the Miocene grassland expansion

le Estep, Matt C., McKain, Michael R., Vela Diaz, Dilys, Zhong, Jinshun, Hodge, John G., Hodkinson, Trevor R., Layton, Daniel J., Malcomber, Simon T., Pasquet, Rémy, Kellogg, Elizabeth A.
Foilsithe 2014

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales

le McKain, Michael R., Tang, Haibao, McNeal, Joel R., Ayyampalayam, Saravanaraj, Davis, Jerrold I., dePamphilis, Claude W., Givnish, Thomas J., Pires, J. Chris, Stevenson, Dennis Wm., Leebens-Mack, James H.
Foilsithe in Genome Biol Evol (2016)

Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca)

le Alger, Elizabeth I., Platts, Adrian E., Deb, Sontosh K., Luo, Xi, Ou, Shujun, Cao, Yao, Hummer, Kim E., Xiong, Zhiyong, Knapp, Steven J., Liu, Zhongchi, McKain, Michael R., Edger, Patrick P.
Foilsithe in Front Genet (2021)

Continued Adaptation of C(4) Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses

le Bianconi, Matheus E, Hackel, Jan, Vorontsova, Maria S, Alberti, Adriana, Arthan, Watchara, Burke, Sean V, Duvall, Melvin R, Kellogg, Elizabeth A, Lavergne, Sébastien, McKain, Michael R, Meunier, Alexandre, Osborne, Colin P, Traiperm, Paweena, Christin, Pascal-Antoine, Besnard, Guillaume
Foilsithe in Syst Biol (2020)

Phylogeny and multiple independent whole‐genome duplication events in the Brassicales

le Mabry, Makenzie E., Brose, Julia M., Blischak, Paul D., Sutherland, Brittany, Dismukes, Wade T., Bottoms, Christopher A., Edger, Patrick P., Washburn, Jacob D., An, Hong, Hall, Jocelyn C., McKain, Michael R., Al‐Shehbaz, Ihsan, Barker, Michael S., Schranz, M. Eric, Conant, Gavin C., Pires, J. Chris
Foilsithe in Am J Bot (2020)

Multiple Polyploidy Events in the Early Radiation of Nodulating and Nonnodulating Legumes

le Cannon, Steven B., McKain, Michael R., Harkess, Alex, Nelson, Matthew N., Dash, Sudhansu, Deyholos, Michael K., Peng, Yanhui, Joyce, Blake, Stewart, Charles N., Rolf, Megan, Kutchan, Toni, Tan, Xuemei, Chen, Cui, Zhang, Yong, Carpenter, Eric, Wong, Gane Ka-Shu, Doyle, Jeff J., Leebens-Mack, Jim
Foilsithe in Mol Biol Evol (2015)

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

le Edger, Patrick P., Smith, Ronald, McKain, Michael R., Cooley, Arielle M., Vallejo-Marin, Mario, Yuan, Yaowu, Bewick, Adam J., Ji, Lexiang, Platts, Adrian E., Bowman, Megan J., Childs, Kevin L., Washburn, Jacob D., Schmitz, Robert J., Smith, Gregory D., Pires, J. Chris, Puzey, Joshua R.
Foilsithe in Plant Cell (2017)

Elucidating steroid alkaloid biosynthesis in Veratrum californicum: production of verazine in Sf9 cells

le Augustin, Megan M., Ruzicka, Dan R., Shukla, Ashutosh K., Augustin, Jörg M., Starks, Courtney M., O’Neil-Johnson, Mark, McKain, Michael R., Evans, Bradley S., Barrett, Matt D., Smithson, Ann, Wong, Gane Ka-Shu, Deyholos, Michael K., Edger, Patrick P., Pires, J. Chris, Leebens-Mack, James H., Mann, David A., Kutchan, Toni M.
Foilsithe in Plant J (2015)

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

le Edger, Patrick P, VanBuren, Robert, Colle, Marivi, Poorten, Thomas J, Wai, Ching Man, Niederhuth, Chad E, Alger, Elizabeth I, Ou, Shujun, Acharya, Charlotte B, Wang, Jie, Callow, Pete, McKain, Michael R, Shi, Jinghua, Collier, Chad, Xiong, Zhiyong, Mower, Jeffrey P, Slovin, Janet P, Hytönen, Timo, Jiang, Ning, Childs, Kevin L, Knapp, Steven J
Foilsithe in Gigascience (2017)

A genome triplication associated with early diversification of the core eudicots

le Jiao, Yuannian, Leebens-Mack, Jim, Ayyampalayam, Saravanaraj, Bowers, John E, McKain, Michael R, McNeal, Joel, Rolf, Megan, Ruzicka, Daniel R, Wafula, Eric, Wickett, Norman J, Wu, Xiaolei, Zhang, Yong, Wang, Jun, Zhang, Yeting, Carpenter, Eric J, Deyholos, Michael K, Kutchan, Toni M, Chanderbali, Andre S, Soltis, Pamela S, Stevenson, Dennis W, McCombie, Richard, Pires, J Chris, Wong, Gane Ka-Shu, Soltis, Douglas E, dePamphilis, Claude W
Foilsithe 2012