Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

Autor MATHEWS, DAVID H.
Vydáno 2004

Using the RNAstructure Software Package to Predict Conserved RNA Structures

Autor Mathews, David H.
Vydáno 2014

RNA Secondary Structure Analysis Using RNAstructure

Autor Mathews, David H.
Vydáno 2006

How to Benchmark RNA Secondary Structure Prediction Accuracy

Autor Mathews, David H.
Vydáno v Methods (2019)

RNAstructure: software for RNA secondary structure prediction and analysis

Autor Mathews David H, Reuter Jessica S
Vydáno 2010-03-01

Predicting helical coaxial stacking in RNA multibranch loops

Autor Tyagi, Rahul, Mathews, David H.
Vydáno 2007

RNAstructure: software for RNA secondary structure prediction and analysis

Autor Reuter, Jessica S, Mathews, David H
Vydáno 2010

ProbKnot: Fast prediction of RNA secondary structure including pseudoknots

Autor Bellaousov, Stanislav, Mathews, David H.
Vydáno 2010

Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences

Autor Xu, Zhenjiang, Mathews, David H.
Vydáno 2011

Using and understanding medical statistics /

Autor Mathews, David E., Farewell, Vernon T.
Vydáno 1985.

Estimating uncertainty in predicted folding free energy changes of RNA secondary structures

Autor Zuber, Jeffrey, Mathews, David H.
Vydáno v RNA (2019)

Efficient siRNA selection using hybridization thermodynamics

Autor Lu, Zhi John, Mathews, David H.
Vydáno 2008

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

Autor Lu, Zhi John, Mathews, David H.
Vydáno 2008

Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design

Autor Lu, Zhi John, Mathews, David H.
Vydáno 2008

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

Autor Turner, Douglas H., Mathews, David H.
Vydáno 2010

Automated RNA Tertiary Structure Prediction from Secondary Structure and Low-Resolution Restraints

Autor Seetin, Matthew G., Mathews, David H.
Vydáno 2011

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots

Autor Seetin, Matthew G., Mathews, David H.
Vydáno 2012

Accelerating calculations of RNA secondary structure partition functions using GPUs

Autor Stern, Harry A, Mathews, David H
Vydáno 2013

Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures

Autor Sloma, Michael F., Mathews, David H.
Vydáno v RNA (2016)

Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs

Autor Sloma, Michael F., Mathews, David H.
Vydáno v PLoS Comput Biol (2017)