Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

per MATHEWS, DAVID H.
Publicat 2004

Using the RNAstructure Software Package to Predict Conserved RNA Structures

per Mathews, David H.
Publicat 2014

RNA Secondary Structure Analysis Using RNAstructure

per Mathews, David H.
Publicat 2006

How to Benchmark RNA Secondary Structure Prediction Accuracy

per Mathews, David H.
Publicat a Methods (2019)

RNAstructure: software for RNA secondary structure prediction and analysis

per Mathews David H, Reuter Jessica S
Publicat 2010-03-01

Predicting helical coaxial stacking in RNA multibranch loops

per Tyagi, Rahul, Mathews, David H.
Publicat 2007

RNAstructure: software for RNA secondary structure prediction and analysis

per Reuter, Jessica S, Mathews, David H
Publicat 2010

ProbKnot: Fast prediction of RNA secondary structure including pseudoknots

per Bellaousov, Stanislav, Mathews, David H.
Publicat 2010

Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences

per Xu, Zhenjiang, Mathews, David H.
Publicat 2011

Using and understanding medical statistics /

per Mathews, David E., Farewell, Vernon T.
Publicat 1985.

Estimating uncertainty in predicted folding free energy changes of RNA secondary structures

per Zuber, Jeffrey, Mathews, David H.
Publicat a RNA (2019)

Efficient siRNA selection using hybridization thermodynamics

per Lu, Zhi John, Mathews, David H.
Publicat 2008

OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics

per Lu, Zhi John, Mathews, David H.
Publicat 2008

Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design

per Lu, Zhi John, Mathews, David H.
Publicat 2008

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

per Turner, Douglas H., Mathews, David H.
Publicat 2010

Automated RNA Tertiary Structure Prediction from Secondary Structure and Low-Resolution Restraints

per Seetin, Matthew G., Mathews, David H.
Publicat 2011

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots

per Seetin, Matthew G., Mathews, David H.
Publicat 2012

Accelerating calculations of RNA secondary structure partition functions using GPUs

per Stern, Harry A, Mathews, David H
Publicat 2013

Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures

per Sloma, Michael F., Mathews, David H.
Publicat a RNA (2016)

Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs

per Sloma, Michael F., Mathews, David H.
Publicat a PLoS Comput Biol (2017)