Motif-based analysis of large nucleotide data sets using MEME-ChIP

Por Ma, Wenxiu, Noble, William S, Bailey, Timothy L
Publicado em 2014

Using CisGenome to Analyze ChIP-chip and ChIP-seq Data

Por Ji, Hongkai, Jiang, Hui, Ma, Wenxiu, Wong, Wing Hung
Publicado em 2011

An integrated system CisGenome for analyzing ChIP-chip and ChIP-seq data

Por Ji, Hongkai, Jiang, Hui, Ma, Wenxiu, Johnson, David S., Myers, Richard M., Wong, Wing H.
Publicado em 2008

Escape from X Inactivation Varies in Mouse Tissues

Por Berletch, Joel B., Ma, Wenxiu, Yang, Fan, Shendure, Jay, Noble, William S., Disteche, Christine M., Deng, Xinxian
Publicado no PLoS Genet (2015)

Identification of genes escaping X inactivation by allelic expression analysis in a novel hybrid mouse model

Por Berletch, Joel B., Ma, Wenxiu, Yang, Fan, Shendure, Jay, Noble, William S., Disteche, Christine M., Deng, Xinxian
Publicado no Data Brief (2015)

Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life

Por Deng, Xinxian, Berletch, Joel B., Ma, Wenxiu, Nguyen, Di Kim, Noble, William S., Shendure, Jay, Disteche, Christine M.
Publicado em 2013

Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis

Por Lee, Eunice Y., Ji, Hongkai, Ouyang, Zhengqing, Zhou, Baiyu, Ma, Wenxiu, Vokes, Steven A., McMahon, Andrew P., Wong, Wing H., Scott, Matthew P.
Publicado em 2010

Bipartite structure of the inactive mouse X chromosome

Por Deng, Xinxian, Ma, Wenxiu, Ramani, Vijay, Hill, Andrew, Yang, Fan, Ay, Ferhat, Berletch, Joel B., Blau, Carl Anthony, Shendure, Jay, Duan, Zhijun, Noble, William S., Disteche, Christine M.
Publicado no Genome Biol (2015)

Insight into Insulin Secretion from Transcriptome and Genetic Analysis of Insulin-Producing Cells of Drosophila

Por Cao, Jian, Ni, Julie, Ma, Wenxiu, Shiu, Vanessa, Milla, Luis A., Park, Sangbin, Spletter, Maria L., Tang, Sheng, Zhang, Jun, Wei, Xing, Kim, Seung K., Scott, Matthew P.
Publicado em 2014

TERT Promotes Epithelial Proliferation through Transcriptional Control of a Myc- and Wnt-Related Developmental Program

Por Choi, Jinkuk, Southworth, Lucinda K, Sarin, Kavita Y, Venteicher, Andrew S, Ma, Wenxiu, Chang, Woody, Cheung, Peggie, Jun, Sohee, Artandi, Maja K, Shah, Naman, Kim, Stuart K, Artandi, Steven E
Publicado em 2008

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

Por Yang, Fan, Deng, Xinxian, Ma, Wenxiu, Berletch, Joel B, Rabaia, Natalia, Wei, Gengze, Moore, James M, Filippova, Galina N, Xu, Jun, Liu, Yajuan, Noble, William S, Shendure, Jay, Disteche, Christine M
Publicado no Genome Biol (2015)

Six2 and Wnt regulate self-renewal and commitment of nephron progenitors through shared gene regulatory networks

Por Park, Joo-Seop, Ma, Wenxiu, O’Brien, Lori L., Chung, Eunah, Guo, Jin-Jin, Cheng, Jr-Gang, Valerius, M. Todd, McMahon, Jill A., Wong, Wing Hung, McMahon, Andrew P.
Publicado em 2012

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes

Por Ma, Wenxiu, Ay, Ferhat, Lee, Choli, Gulsoy, Gunhan, Deng, Xinxian, Cook, Savannah, Hesson, Jennifer, Cavanaugh, Christopher, Ware, Carol B., Krumm, Anton, Shendure, Jay, Blau, C. Anthony, Disteche, Christine M., Noble, William S., Duan, ZhiJun
Publicado no Nat Methods (2014)

Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning

Por Peterson, Kevin A., Nishi, Yuichi, Ma, Wenxiu, Vedenko, Anastasia, Shokri, Leila, Zhang, Xiaoxiao, McFarlane, Matthew, Baizabal, José-Manuel, Junker, Jan Philipp, van Oudenaarden, Alexander, Mikkelsen, Tarjei, Bernstein, Bradley E., Bailey, Timothy L., Bulyk, Martha L., Wong, Wing H., McMahon, Andrew P.
Publicado em 2012