KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

per Sacomoto, Gustavo AT, Kielbassa, Janice, Chikhi, Rayan, Uricaru, Raluca, Antoniou, Pavlos, Sagot, Marie-France, Peterlongo, Pierre, Lacroix, Vincent
Publicat 2012

Exploration of the core metabolism of symbiotic bacteria

per Klein, Cecilia Coimbra, Cottret, Ludovic, Kielbassa, Janice, Charles, Hubert, Gautier, Christian, Ribeiro de Vasconcelos, Ana Tereza, Lacroix, Vincent, Sagot, Marie-France
Publicat 2012

Comprehensive characterization of claudin-low breast tumors reflects the impact of the cell-of-origin on cancer evolution

per Pommier, Roxane M., Sanlaville, Amélien, Tonon, Laurie, Kielbassa, Janice, Thomas, Emilie, Ferrari, Anthony, Sertier, Anne-Sophie, Hollande, Frédéric, Martinez, Pierre, Tissier, Agnès, Morel, Anne-Pierre, Ouzounova, Maria, Puisieux, Alain
Publicat a Nat Commun (2020)

A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes

per Foy, Jean-Philippe, Bazire, Louis, Ortiz-Cuaran, Sandra, Deneuve, Sophie, Kielbassa, Janice, Thomas, Emilie, Viari, Alain, Puisieux, Alain, Goudot, Patrick, Bertolus, Chloé, Foray, Nicolas, Kirova, Youlia, Verrelle, Pierre, Saintigny, Pierre
Publicat a BMC Med (2017)

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

per Lopez-Maestre, Hélène, Brinza, Lilia, Marchet, Camille, Kielbassa, Janice, Bastien, Sylvère, Boutigny, Mathilde, Monnin, David, Filali, Adil El, Carareto, Claudia Marcia, Vieira, Cristina, Picard, Franck, Kremer, Natacha, Vavre, Fabrice, Sagot, Marie-France, Lacroix, Vincent
Publicat a Nucleic Acids Res (2016)

Immunological and classical subtypes of oral premalignant lesions

per Foy, Jean-Philippe, Bertolus, Chloé, Ortiz-Cuaran, Sandra, Albaret, Marie-Alexandra, Williams, William N, Lang, Wenhua, Destandau, Solène, Souza, Geneviève De, Sohier, Emilie, Kielbassa, Janice, Thomas, Emilie, Deneuve, Sophie, Goudot, Patrick, Puisieux, Alain, Viari, Alain, Mao, Li, Caux, Christophe, Lippman, SM, Saintigny, P
Publicat a Oncoimmunology (2018)

Ribosomal RNA 2′ O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

per Marcel, Virginie, Kielbassa, Janice, Marchand, Virginie, Natchiar, Kundhavai S, Paraqindes, Hermes, Van Long, Flora Nguyen, Ayadi, Lilia, Bourguignon-Igel, Valérie, Monaco, Piero Lo, Monchiet, Déborah, Scott, Véronique, Tonon, Laurie, Bray, Susan E, Diot, Alexandra, Jordan, Lee B, Thompson, Alastair M, Bourdon, Jean-Christophe, Dubois, Thierry, André, Fabrice, Catez, Frédéric, Puisieux, Alain, Motorin, Yuri, Klaholz, Bruno P, Viari, Alain, Diaz, Jean-Jacques
Publicat a NAR Cancer (2021)

Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

per Marcel, Virginie, Kielbassa, Janice, Marchand, Virginie, Natchiar, Kundhavai S, Paraqindes, Hermes, Nguyen Van Long, Flora, Ayadi, Lilia, Bourguignon-Igel, Valérie, Lo Monaco, Piero, Monchiet, Déborah, Scott, Véronique, Tonon, Laurie, Bray, Susan E, Diot, Alexandra, Jordan, Lee B, Thompson, Alastair M, Bourdon, Jean-Christophe, Dubois, Thierry, André, Fabrice, Catez, Frédéric, Puisieux, Alain, Motorin, Yuri, Klaholz, Bruno P, Viari, Alain, Diaz, Jean-Jacques
Publicat a NAR Cancer (2020)

A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers

per Ferrari, Anthony, Vincent-Salomon, Anne, Pivot, Xavier, Sertier, Anne-Sophie, Thomas, Emilie, Tonon, Laurie, Boyault, Sandrine, Mulugeta, Eskeatnaf, Treilleux, Isabelle, MacGrogan, Gaëtan, Arnould, Laurent, Kielbassa, Janice, Le Texier, Vincent, Blanché, Hélène, Deleuze, Jean-François, Jacquemier, Jocelyne, Mathieu, Marie-Christine, Penault-Llorca, Frédérique, Bibeau, Frédéric, Mariani, Odette, Mannina, Cécile, Pierga, Jean-Yves, Trédan, Olivier, Bachelot, Thomas, Bonnefoi, Hervé, Romieu, Gilles, Fumoleau, Pierre, Delaloge, Suzette, Rios, Maria, Ferrero, Jean-Marc, Tarpin, Carole, Bouteille, Catherine, Calvo, Fabien, Gut, Ivo Glynne, Gut, Marta, Martin, Sancha, Nik-Zainal, Serena, Stratton, Michael R., Pauporté, Iris, Saintigny, Pierre, Birnbaum, Daniel, Viari, Alain, Thomas, Gilles
Publicat a Nat Commun (2016)