TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

von Lerat, Emmanuelle, Fablet, Marie, Modolo, Laurent, Lopez-Maestre, Hélène, Vieira, Cristina
Veröffentlicht in Nucleic Acids Res (2017)

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

von Lima, Leandro, Sinaimeri, Blerina, Sacomoto, Gustavo, Lopez-Maestre, Helene, Marchet, Camille, Miele, Vincent, Sagot, Marie-France, Lacroix, Vincent
Veröffentlicht in Algorithms Mol Biol (2017)

Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids

von Romero-Soriano, Valèria, Modolo, Laurent, Lopez-Maestre, Hélène, Mugat, Bruno, Pessia, Eugénie, Chambeyron, Séverine, Vieira, Cristina, Garcia Guerreiro, Maria Pilar
Veröffentlicht in Genome Biol Evol (2017)

Identification of misexpressed genetic elements in hybrids between Drosophila-related species

von Lopez-Maestre, Hélène, Carnelossi, Elias A. G., Lacroix, Vincent, Burlet, Nelly, Mugat, Bruno, Chambeyron, Séverine, Carareto, Claudia M. A., Vieira, Cristina
Veröffentlicht in Sci Rep (2017)

SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

von Lopez-Maestre, Hélène, Brinza, Lilia, Marchet, Camille, Kielbassa, Janice, Bastien, Sylvère, Boutigny, Mathilde, Monnin, David, Filali, Adil El, Carareto, Claudia Marcia, Vieira, Cristina, Picard, Franck, Kremer, Natacha, Vavre, Fabrice, Sagot, Marie-France, Lacroix, Vincent
Veröffentlicht in Nucleic Acids Res (2016)